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| Mutant Information |
|---|
| Mutant Name | FN3571-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3571-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12327415 | G-A | Homo | ||
| SBS | Chr1 | 15556520 | C-A | Homo | ||
| SBS | Chr1 | 22744270 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g40280 |
| SBS | Chr1 | 8527194 | A-G | HET | ||
| SBS | Chr10 | 19980365 | T-A | Homo | ||
| SBS | Chr10 | 5039510 | C-T | HET | ||
| SBS | Chr10 | 5807514 | C-T | HET | ||
| SBS | Chr10 | 6120021 | G-A | HET | ||
| SBS | Chr10 | 8677928 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g17250 |
| SBS | Chr11 | 13765134 | C-T | Homo | ||
| SBS | Chr2 | 12840378 | C-A | Homo | ||
| SBS | Chr2 | 28422614 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g46600 |
| SBS | Chr3 | 14466355 | C-A | HET | ||
| SBS | Chr3 | 16198436 | C-T | HET | ||
| SBS | Chr3 | 17803416 | C-T | HET | ||
| SBS | Chr3 | 22556433 | G-A | HET | ||
| SBS | Chr3 | 29796695 | C-A | HET | ||
| SBS | Chr4 | 13031214 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g22960 |
| SBS | Chr4 | 4612119 | C-A | HET | ||
| SBS | Chr5 | 10999263 | T-C | Homo | ||
| SBS | Chr6 | 28012538 | C-T | HET | ||
| SBS | Chr7 | 26970882 | C-T | HET | ||
| SBS | Chr8 | 4295637 | A-G | Homo | ||
| SBS | Chr8 | 8440420 | C-G | Homo | ||
| SBS | Chr9 | 15412838 | T-A | HET |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 3662852 | 3662857 | 5 | |
| Deletion | Chr12 | 4522845 | 4522848 | 3 | LOC_Os12g08790 |
| Deletion | Chr5 | 5186492 | 5186513 | 21 | |
| Deletion | Chr8 | 10397518 | 10397524 | 6 | |
| Deletion | Chr5 | 10999186 | 10999188 | 2 | |
| Deletion | Chr10 | 19769831 | 19769841 | 10 | |
| Deletion | Chr6 | 21651736 | 21651744 | 8 | |
| Deletion | Chr6 | 30712942 | 30712943 | 1 | |
| Deletion | Chr2 | 30937986 | 30937989 | 3 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 29933360 | 29933360 | 1 | LOC_Os04g50172 |
| Insertion | Chr6 | 25082341 | 25082341 | 1 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 2549254 | 3515813 | 2 |
| Inversion | Chr10 | 2549257 | 3515811 | 2 |
| Inversion | Chr8 | 6726040 | 6746833 | 2 |
| Inversion | Chr8 | 6726620 | 6746838 | 2 |
| Inversion | Chr7 | 7865876 | 8680745 | LOC_Os07g13700 |
| Inversion | Chr4 | 14478160 | 14478456 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 7117974 | Chr4 | 12158 | |
| Translocation | Chr7 | 7865884 | Chr5 | 23523906 | LOC_Os07g13700 |
| Translocation | Chr7 | 7866107 | Chr5 | 23523910 | LOC_Os07g13700 |
| Translocation | Chr11 | 8742760 | Chr3 | 27931135 | LOC_Os11g15430 |
| Translocation | Chr7 | 10938183 | Chr3 | 22121981 | |
| Translocation | Chr5 | 11149282 | Chr4 | 17545687 | 2 |
| Translocation | Chr10 | 11338592 | Chr6 | 10850183 | 2 |
| Translocation | Chr8 | 18421756 | Chr2 | 18426395 | LOC_Os08g29990 |
| Translocation | Chr7 | 22771291 | Chr6 | 14580538 |