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Mutant Information

Mutant NameFN3572-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3572-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 24
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr112016025C-AHET
SBSChr118845021C-THET
SBSChr119074903G-CHET
SBSChr103746236C-THET
SBSChr104349950C-THET
SBSChr1110171207C-THomo
SBSChr1110171209G-AHomo
SBSChr111791470C-AHETNON_SYNONYMOUS_CODINGLOC_Os11g04300
SBSChr113014996G-CHomoNON_SYNONYMOUS_CODINGLOC_Os11g06280
SBSChr213001946G-AHomo
SBSChr313403721C-THET
SBSChr317238939G-THomo
SBSChr331199906C-THET
SBSChr412540725T-AHomo
SBSChr42000188G-AHomo
SBSChr428018721C-THomoNON_SYNONYMOUS_CODINGLOC_Os04g47180
SBSChr610385361G-CHomo
SBSChr621328934C-AHET
SBSChr65913473C-THETNON_SYNONYMOUS_CODINGLOC_Os06g11280
SBSChr720257212T-CHET
SBSChr7925375C-THET
SBSChr813881384G-THomo
SBSChr813881386A-THomo
SBSChr913593310A-GHET

Deletions: 15
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr6179067417906828LOC_Os06g04250
DeletionChr93273386327340620
DeletionChr115157775515779419
DeletionChr11611700061170011
DeletionChr71224123212241863631
DeletionChr1113539569135395701LOC_Os11g23900
DeletionChr111950100119550000489998
DeletionChr1125072336250723371LOC_Os11g41760
DeletionChr7260990072609902114
DeletionChr726503253265032552
DeletionChr226697972266979786
DeletionChr1226732081267320843
DeletionChr628008579280085823
DeletionChr6304940013073800024399938
DeletionChr435499886354998882

Insertions: 2
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr104529057452907822
InsertionChr630058988300589892

Inversions: 5
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr1794261581180592
InversionChr1794262081180642
InversionChr82109878821099065
InversionChr32752766827710750LOC_Os03g48330
InversionChr32752768327710760LOC_Os03g48330

Translocations: 6
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr81942170Chr47918772
TranslocationChr418238944Chr216817837
TranslocationChr920408203Chr35235471
TranslocationChr1121128565Chr119235237
TranslocationChr1225725721Chr27526397
TranslocationChr728305918Chr1176133962