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| Mutant Information |
|---|
| Mutant Name | FN3572-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3572-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12016025 | C-A | HET | ||
| SBS | Chr1 | 18845021 | C-T | HET | ||
| SBS | Chr1 | 19074903 | G-C | HET | ||
| SBS | Chr10 | 3746236 | C-T | HET | ||
| SBS | Chr10 | 4349950 | C-T | HET | ||
| SBS | Chr11 | 10171207 | C-T | Homo | ||
| SBS | Chr11 | 10171209 | G-A | Homo | ||
| SBS | Chr11 | 1791470 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g04300 |
| SBS | Chr11 | 3014996 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g06280 |
| SBS | Chr2 | 13001946 | G-A | Homo | ||
| SBS | Chr3 | 13403721 | C-T | HET | ||
| SBS | Chr3 | 17238939 | G-T | Homo | ||
| SBS | Chr3 | 31199906 | C-T | HET | ||
| SBS | Chr4 | 12540725 | T-A | Homo | ||
| SBS | Chr4 | 2000188 | G-A | Homo | ||
| SBS | Chr4 | 28018721 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g47180 |
| SBS | Chr6 | 10385361 | G-C | Homo | ||
| SBS | Chr6 | 21328934 | C-A | HET | ||
| SBS | Chr6 | 5913473 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g11280 |
| SBS | Chr7 | 20257212 | T-C | HET | ||
| SBS | Chr7 | 925375 | C-T | HET | ||
| SBS | Chr8 | 13881384 | G-T | Homo | ||
| SBS | Chr8 | 13881386 | A-T | Homo | ||
| SBS | Chr9 | 13593310 | A-G | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 1790674 | 1790682 | 8 | LOC_Os06g04250 |
| Deletion | Chr9 | 3273386 | 3273406 | 20 | |
| Deletion | Chr11 | 5157775 | 5157794 | 19 | |
| Deletion | Chr11 | 6117000 | 6117001 | 1 | |
| Deletion | Chr7 | 12241232 | 12241863 | 631 | |
| Deletion | Chr11 | 13539569 | 13539570 | 1 | LOC_Os11g23900 |
| Deletion | Chr11 | 19501001 | 19550000 | 48999 | 8 |
| Deletion | Chr11 | 25072336 | 25072337 | 1 | LOC_Os11g41760 |
| Deletion | Chr7 | 26099007 | 26099021 | 14 | |
| Deletion | Chr7 | 26503253 | 26503255 | 2 | |
| Deletion | Chr2 | 26697972 | 26697978 | 6 | |
| Deletion | Chr12 | 26732081 | 26732084 | 3 | |
| Deletion | Chr6 | 28008579 | 28008582 | 3 | |
| Deletion | Chr6 | 30494001 | 30738000 | 243999 | 38 |
| Deletion | Chr4 | 35499886 | 35499888 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 4529057 | 4529078 | 22 | |
| Insertion | Chr6 | 30058988 | 30058989 | 2 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 7942615 | 8118059 | 2 |
| Inversion | Chr1 | 7942620 | 8118064 | 2 |
| Inversion | Chr8 | 21098788 | 21099065 | |
| Inversion | Chr3 | 27527668 | 27710750 | LOC_Os03g48330 |
| Inversion | Chr3 | 27527683 | 27710760 | LOC_Os03g48330 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 1942170 | Chr4 | 7918772 | |
| Translocation | Chr4 | 18238944 | Chr2 | 16817837 | |
| Translocation | Chr9 | 20408203 | Chr3 | 5235471 | |
| Translocation | Chr11 | 21128565 | Chr1 | 19235237 | |
| Translocation | Chr12 | 25725721 | Chr2 | 7526397 | |
| Translocation | Chr7 | 28305918 | Chr1 | 17613396 | 2 |