Search Nipponbare

Mutant Information

Mutant Name	FN3573-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3573-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 14

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20090121	A-C	HET
SBS	Chr11	20283234	T-C	HET
SBS	Chr12	22718283	G-T	HET
SBS	Chr12	9262774	A-T	Homo
SBS	Chr2	22026129	G-A	HET
SBS	Chr4	5014457	A-T	Homo
SBS	Chr4	8544757	G-C	HET
SBS	Chr5	15817608	G-C	HET
SBS	Chr5	20196689	C-T	HET
SBS	Chr5	29750582	A-G	HET
SBS	Chr7	16536956	A-T	HET
SBS	Chr8	10987239	G-A	HET
SBS	Chr8	19005471	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30780
SBS	Chr8	19480288	T-C	HET

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	752349	752379	30
Deletion	Chr7	8551787	8551860	73
Deletion	Chr11	9807586	9807608	22
Deletion	Chr3	15300186	15300196	10
Deletion	Chr6	17096509	17096510	1
Deletion	Chr11	20593922	20593926	4
Deletion	Chr12	24182586	24182588	2
Deletion	Chr4	24768068	24768072	4
Deletion	Chr5	29750552	29750567	15
Deletion	Chr6	30301260	30301266	6
Deletion	Chr2	33923464	33923468	4

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	14175586	14175587	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	33255151	33918438	LOC_Os04g55850
Inversion	Chr4	33318082	33918439	LOC_Os04g55940

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	4757267	Chr4	1178866
Translocation	Chr7	11476066	Chr1	6202302
Translocation	Chr6	16700425	Chr1	2811518	2