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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26014597	T-C	HET
SBS	Chr1	6643119	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g12180
SBS	Chr10	15346128	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g29540
SBS	Chr11	25464636	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g42280
SBS	Chr11	25464637	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g42280
SBS	Chr11	9844602	G-A	HET
SBS	Chr12	12583631	A-G	Homo
SBS	Chr12	23733068	C-G	Homo
SBS	Chr2	11785648	C-T	HET
SBS	Chr2	14225656	G-T	HET
SBS	Chr2	16330917	T-C	HET
SBS	Chr2	16330919	C-A	HET
SBS	Chr2	4659763	G-A	HET	STOP_GAINED	LOC_Os02g09100
SBS	Chr2	9280015	A-G	Homo
SBS	Chr4	25590976	A-T	Homo
SBS	Chr4	33289733	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g55910
SBS	Chr5	12250037	T-G	HET
SBS	Chr5	16504254	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g28190
SBS	Chr5	18022342	G-A	HET
SBS	Chr5	1957267	G-A	HET
SBS	Chr5	5705663	A-G	HET
SBS	Chr5	6346564	C-A	HET
SBS	Chr8	1130399	A-G	HET
SBS	Chr9	11244442	A-G	HET
SBS	Chr9	11594892	A-G	HET
SBS	Chr9	17679740	C-A	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	5070035	5070045	10
Deletion	Chr3	5434035	5434039	4
Deletion	Chr11	6654326	6654330	4
Deletion	Chr2	9279232	9279233	1
Deletion	Chr11	10253465	10253472	7
Deletion	Chr6	10368935	10368940	5
Deletion	Chr5	11904013	11904020	7
Deletion	Chr2	14100309	14100311	2
Deletion	Chr7	16500569	16500578	9
Deletion	Chr7	17175172	17175173	1
Deletion	Chr7	21916097	21916099	2
Deletion	Chr4	27317368	27317369	1
Deletion	Chr4	31680484	31680490	6
Deletion	Chr1	40078989	40078990	1	LOC_Os01g68990
Deletion	Chr1	42580513	42580519	6	LOC_Os01g73480

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	24494278	24494311	34
Insertion	Chr1	9334526	9334527	2
Insertion	Chr7	17374405	17374412	8

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	468901	906471	LOC_Os09g01650
Inversion	Chr9	468903	906478	LOC_Os09g01650
Inversion	Chr9	11066097	11538259	2
Inversion	Chr9	11066112	11538268	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	8571270	Chr7	26749105	LOC_Os11g15190
Translocation	Chr11	8573691	Chr7	26749084
Translocation	Chr2	14220310	Chr1	6644520	2

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