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| Mutant Information |
|---|
| Mutant Name | FN3575-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3575-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20946643 | C-G | HET | ||
| SBS | Chr1 | 30045761 | T-G | HET | ||
| SBS | Chr1 | 36436387 | A-G | HET | ||
| SBS | Chr1 | 3905569 | T-A | HET | ||
| SBS | Chr1 | 40340487 | C-T | HET | ||
| SBS | Chr10 | 4992047 | T-G | Homo | ||
| SBS | Chr11 | 26716993 | G-A | HET | ||
| SBS | Chr12 | 24583136 | C-T | HET | ||
| SBS | Chr12 | 3913687 | G-A | HET | ||
| SBS | Chr2 | 13123691 | C-T | HET | ||
| SBS | Chr2 | 3414537 | T-C | Homo | ||
| SBS | Chr3 | 20383401 | T-A | Homo | ||
| SBS | Chr4 | 29884868 | A-G | HET | ||
| SBS | Chr4 | 6809689 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g12340 |
| SBS | Chr5 | 1765066 | G-A | HET | ||
| SBS | Chr5 | 1861799 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os05g04150 |
| SBS | Chr7 | 19603461 | G-A | HET | ||
| SBS | Chr8 | 12822436 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g21520 |
| SBS | Chr8 | 9593849 | G-C | Homo | ||
| SBS | Chr9 | 4149146 | G-A | HET |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 601055 | 601067 | 12 | |
| Deletion | Chr3 | 3538759 | 3538772 | 13 | |
| Deletion | Chr11 | 9001794 | 9001813 | 19 | LOC_Os11g16320 |
| Deletion | Chr4 | 9449788 | 9449789 | 1 | |
| Deletion | Chr5 | 9509209 | 9509211 | 2 | LOC_Os05g16720 |
| Deletion | Chr6 | 10428913 | 10429013 | 100 | |
| Deletion | Chr12 | 10595482 | 10595487 | 5 | |
| Deletion | Chr6 | 11175133 | 11175140 | 7 | |
| Deletion | Chr3 | 13361113 | 13361126 | 13 | LOC_Os03g23110 |
| Deletion | Chr3 | 13700421 | 13700422 | 1 | |
| Deletion | Chr9 | 15880294 | 15880295 | 1 | |
| Deletion | Chr7 | 21103828 | 21103833 | 5 | |
| Deletion | Chr2 | 24139577 | 24139583 | 6 | |
| Deletion | Chr11 | 28496512 | 28496521 | 9 | |
| Deletion | Chr4 | 30207851 | 30207853 | 2 | |
| Deletion | Chr1 | 41876689 | 41876690 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 20494671 | 20494671 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 1878134 | 1878775 | |
| Inversion | Chr6 | 14266357 | 14266749 | LOC_Os06g24370 |
| Inversion | Chr1 | 31527355 | 31528492 | |
| Inversion | Chr1 | 31527368 | 31528506 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 8640342 | Chr4 | 2525547 | 2 |
| Translocation | Chr8 | 17299160 | Chr4 | 18885956 | LOC_Os08g28350 |
| Translocation | Chr11 | 22502384 | Chr10 | 3012236 | LOC_Os11g37950 |
| Translocation | Chr8 | 27473648 | Chr1 | 3092966 | LOC_Os08g43430 |
| Translocation | Chr11 | 27626390 | Chr6 | 9802013 |