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| Mutant Information |
|---|
| Mutant Name | FN3576-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3576-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15655463 | C-T | Homo | ||
| SBS | Chr1 | 6553196 | G-C | HET | ||
| SBS | Chr1 | 6692565 | T-C | Homo | ||
| SBS | Chr10 | 10151355 | C-T | Homo | ||
| SBS | Chr10 | 12498635 | C-T | Homo | ||
| SBS | Chr10 | 18083299 | T-G | HET | ||
| SBS | Chr12 | 14137856 | A-T | Homo | ||
| SBS | Chr2 | 30472796 | A-G | Homo | ||
| SBS | Chr2 | 5695755 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g10770 |
| SBS | Chr3 | 20099067 | G-A | HET | ||
| SBS | Chr3 | 20099068 | G-A | HET | ||
| SBS | Chr4 | 13473233 | A-C | HET | ||
| SBS | Chr4 | 4305706 | G-A | HET | ||
| SBS | Chr5 | 14230323 | G-T | Homo | ||
| SBS | Chr5 | 17449612 | G-A | HET | ||
| SBS | Chr5 | 21473821 | C-A | HET | ||
| SBS | Chr5 | 22613998 | G-A | HET | ||
| SBS | Chr5 | 29326092 | C-A | HET | ||
| SBS | Chr5 | 29576819 | C-G | HET | ||
| SBS | Chr6 | 26741161 | A-T | Homo | ||
| SBS | Chr6 | 5108167 | G-A | HET | ||
| SBS | Chr7 | 15165044 | C-T | HET | ||
| SBS | Chr7 | 1834608 | T-C | Homo | ||
| SBS | Chr9 | 16095427 | A-G | Homo |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 428345 | 428348 | 3 | |
| Deletion | Chr4 | 1237001 | 1578000 | 340999 | 51 |
| Deletion | Chr7 | 2158383 | 2158387 | 4 | |
| Deletion | Chr1 | 9054098 | 9054113 | 15 | |
| Deletion | Chr5 | 11075543 | 11075544 | 1 | LOC_Os05g19080 |
| Deletion | Chr7 | 11857260 | 11857267 | 7 | |
| Deletion | Chr8 | 12438441 | 12438445 | 4 | |
| Deletion | Chr8 | 15817978 | 15817980 | 2 | |
| Deletion | Chr2 | 17281001 | 17306000 | 24999 | 3 |
| Deletion | Chr12 | 18709901 | 18709902 | 1 | |
| Deletion | Chr3 | 20354844 | 20354845 | 1 | |
| Deletion | Chr8 | 21503920 | 21503930 | 10 | |
| Deletion | Chr1 | 22082800 | 22082801 | 1 | |
| Deletion | Chr1 | 22776146 | 22776165 | 19 | |
| Deletion | Chr12 | 26186004 | 26186005 | 1 | |
| Deletion | Chr4 | 28522617 | 28522630 | 13 | |
| Deletion | Chr11 | 28879599 | 28879602 | 3 | |
| Deletion | Chr1 | 36722839 | 36722852 | 13 | LOC_Os01g63354 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 4021831 | 4021831 | 1 | |
| Insertion | Chr6 | 29086294 | 29086294 | 1 | LOC_Os06g48070 |
| Insertion | Chr8 | 12235559 | 12235559 | 1 | |
| Insertion | Chr9 | 6572364 | 6572365 | 2 |
Inversions: 10
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 423622 | 1231914 | 2 |
| Inversion | Chr9 | 9609275 | 10345246 | |
| Inversion | Chr2 | 16574233 | 17278898 | 2 |
| Inversion | Chr10 | 16938650 | 17660645 | 2 |
| Inversion | Chr10 | 16938658 | 17660653 | 2 |
| Inversion | Chr2 | 17289418 | 17875413 | 2 |
| Inversion | Chr2 | 17289502 | 17863729 | 2 |
| Inversion | Chr2 | 17362331 | 17787412 | LOC_Os02g29230 |
| Inversion | Chr2 | 29502771 | 29700585 | LOC_Os02g48190 |
| Inversion | Chr2 | 29502800 | 29719139 | 2 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 3543878 | Chr3 | 13563774 | |
| Translocation | Chr9 | 10497621 | Chr2 | 29700584 | |
| Translocation | Chr10 | 11877044 | Chr2 | 16574241 | 2 |
| Translocation | Chr9 | 12700994 | Chr2 | 29719123 | 2 |