Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3578-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3578-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10857724 | C-T | HET | ||
| SBS | Chr1 | 20605987 | T-C | Homo | ||
| SBS | Chr10 | 6531355 | T-G | Homo | ||
| SBS | Chr10 | 9702552 | C-G | HET | ||
| SBS | Chr11 | 11917951 | T-G | Homo | ||
| SBS | Chr11 | 19928081 | T-C | HET | ||
| SBS | Chr11 | 22955406 | T-C | Homo | ||
| SBS | Chr11 | 25204448 | G-A | Homo | ||
| SBS | Chr11 | 4402028 | C-T | HET | ||
| SBS | Chr11 | 9709478 | C-T | Homo | ||
| SBS | Chr11 | 9709480 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g17410 |
| SBS | Chr12 | 13765149 | C-T | HET | ||
| SBS | Chr3 | 18818890 | C-G | Homo | ||
| SBS | Chr3 | 23974749 | A-G | Homo | ||
| SBS | Chr4 | 24144964 | T-C | Homo | ||
| SBS | Chr5 | 12797453 | C-T | Homo | ||
| SBS | Chr6 | 17965107 | A-T | Homo | ||
| SBS | Chr6 | 19548193 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g33570 |
| SBS | Chr7 | 11170206 | G-C | HET | ||
| SBS | Chr7 | 17891357 | T-A | Homo | ||
| SBS | Chr7 | 21397398 | T-A | HET | ||
| SBS | Chr7 | 7296632 | C-T | HET | ||
| SBS | Chr8 | 13175449 | C-A | HET | ||
| SBS | Chr8 | 13483619 | A-G | HET | ||
| SBS | Chr8 | 13704155 | G-A | HET | SPLICE_SITE_ACCEPTOR | LOC_Os08g22790 |
| SBS | Chr8 | 24333367 | T-C | HET | ||
| SBS | Chr8 | 4262737 | A-T | HET | ||
| SBS | Chr9 | 13623692 | G-T | Homo | ||
| SBS | Chr9 | 6115942 | A-T | HET |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 549976 | 549982 | 6 | |
| Deletion | Chr8 | 987974 | 987976 | 2 | |
| Deletion | Chr2 | 8779760 | 8779761 | 1 | LOC_Os02g15620 |
| Deletion | Chr2 | 8982428 | 8982432 | 4 | |
| Deletion | Chr12 | 11726851 | 11726857 | 6 | |
| Deletion | Chr9 | 13333785 | 13333789 | 4 | |
| Deletion | Chr2 | 15732691 | 15732692 | 1 | |
| Deletion | Chr10 | 17944443 | 17944450 | 7 | |
| Deletion | Chr10 | 18136190 | 18136196 | 6 | |
| Deletion | Chr12 | 18235081 | 18235082 | 1 | LOC_Os12g30380 |
| Deletion | Chr6 | 18273627 | 18273628 | 1 | |
| Deletion | Chr8 | 22807115 | 22807118 | 3 | |
| Deletion | Chr6 | 23128969 | 23128974 | 5 | |
| Deletion | Chr11 | 25272009 | 25272016 | 7 | |
| Deletion | Chr1 | 25611755 | 25611759 | 4 | |
| Deletion | Chr3 | 33779851 | 33779861 | 10 | |
| Deletion | Chr1 | 43107001 | 43149000 | 41999 | 7 |
Insertions: 5
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 3104607 | 3704681 | LOC_Os08g05790 |
| Inversion | Chr8 | 3104608 | 3704673 | LOC_Os08g05790 |
| Inversion | Chr11 | 9478132 | 9478232 | LOC_Os11g17080 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 3021810 | Chr1 | 27404619 | |
| Translocation | Chr9 | 7255193 | Chr6 | 8905632 | |
| Translocation | Chr8 | 12007432 | Chr3 | 13987599 | 2 |
| Translocation | Chr12 | 12431609 | Chr2 | 7725032 | LOC_Os12g22090 |
| Translocation | Chr8 | 26468558 | Chr1 | 43145856 | 2 |
| Translocation | Chr12 | 27067032 | Chr7 | 4745393 | |
| Translocation | Chr8 | 28377720 | Chr1 | 43104767 | 2 |