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Mutant Information

Mutant Name	FN358-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN358-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25261992	T-G	HOMO	INTRON
SBS	Chr1	40192840	A-G	HET	INTERGENIC
SBS	Chr10	16325483	G-T	HET	INTRON
SBS	Chr10	17196022	T-A	HET	INTERGENIC
SBS	Chr10	22572158	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g41970
SBS	Chr11	20050670	G-A	HOMO	INTERGENIC
SBS	Chr11	8573079	G-C	HET	INTERGENIC
SBS	Chr12	17628828	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g29580
SBS	Chr2	28641083	C-T	HET	INTERGENIC
SBS	Chr4	21160619	G-C	HET	INTERGENIC
SBS	Chr4	6453995	T-A	HOMO	INTERGENIC
SBS	Chr5	11925997	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g20340
SBS	Chr5	7229018	G-A	HOMO	INTERGENIC
SBS	Chr5	7535590	C-T	HET	INTERGENIC
SBS	Chr6	14631535	G-A	HOMO	INTERGENIC
SBS	Chr6	16917794	T-A	HOMO	INTERGENIC
SBS	Chr8	9627840	G-A	HET	INTERGENIC
SBS	Chr8	9942655	T-C	HET	INTERGENIC
SBS	Chr9	6558086	G-A	HET	INTRON

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	741909	741910	1
Deletion	Chr2	3842669	3842724	55
Deletion	Chr2	5192568	5192579	11
Deletion	Chr4	6323659	6323660	1
Deletion	Chr2	7725820	7726617	797
Deletion	Chr5	11489809	11489810	1
Deletion	Chr5	11934238	11934240	2
Deletion	Chr10	13229260	13229268	8
Deletion	Chr8	13438720	13438725	5
Deletion	Chr9	13726035	13726040	5
Deletion	Chr10	15681442	15681445	3
Deletion	Chr7	15686485	15686495	10	LOC_Os07g27070
Deletion	Chr1	19478566	19478574	8
Deletion	Chr5	21332866	21332872	6
Deletion	Chr8	24845412	24845414	2
Deletion	Chr5	26881408	26881409	1
Deletion	Chr4	28750161	28750162	1
Deletion	Chr2	32646718	32646720	2
Deletion	Chr2	35310863	35310878	15

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	1252878	1252879	2
Insertion	Chr6	24457530	24457530	1
Insertion	Chr7	29661649	29661650	2
Insertion	Chr8	21075346	21075347	2
Insertion	Chr8	9500109	9500110	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	6458418	7249844	2
Inversion	Chr2	15692444	16297991

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	11939179	Chr4	9420207	2
Translocation	Chr2	15643359	Chr1	42689213	2
Translocation	Chr2	15692396	Chr1	42689204	LOC_Os01g73670
Translocation	Chr6	16306804	Chr4	26648676	LOC_Os04g45040