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| Mutant Information |
|---|
| Mutant Name | FN3580-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3580-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19378059 | A-T | HET | ||
| SBS | Chr1 | 21279766 | G-T | HET | ||
| SBS | Chr1 | 32132723 | C-T | Homo | ||
| SBS | Chr1 | 9971935 | C-T | Homo | ||
| SBS | Chr10 | 14166441 | G-A | HET | ||
| SBS | Chr10 | 15259112 | A-T | HET | ||
| SBS | Chr10 | 8548063 | C-T | HET | ||
| SBS | Chr11 | 5695418 | A-G | Homo | ||
| SBS | Chr12 | 15432355 | G-C | HET | ||
| SBS | Chr12 | 22827443 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g37210 |
| SBS | Chr2 | 13522436 | G-A | HET | ||
| SBS | Chr3 | 17364962 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g30450 |
| SBS | Chr3 | 24693429 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g43970 |
| SBS | Chr3 | 31868673 | A-T | HET | ||
| SBS | Chr3 | 34059985 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g59810 |
| SBS | Chr3 | 9842653 | G-T | HET | ||
| SBS | Chr4 | 25473317 | T-C | HET | ||
| SBS | Chr4 | 29677997 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g49780 |
| SBS | Chr5 | 29720898 | T-C | HET | ||
| SBS | Chr5 | 727754 | C-T | Homo | ||
| SBS | Chr7 | 18877845 | T-G | HET | ||
| SBS | Chr7 | 3302886 | G-A | HET | ||
| SBS | Chr7 | 5969246 | A-T | HET | ||
| SBS | Chr8 | 14222178 | T-G | HET | ||
| SBS | Chr9 | 12553567 | T-G | Homo | ||
| SBS | Chr9 | 22632214 | G-A | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 1208001 | 1222000 | 13999 | 2 |
| Deletion | Chr3 | 1732971 | 1732979 | 8 | |
| Deletion | Chr10 | 2057433 | 2057439 | 6 | |
| Deletion | Chr6 | 2072257 | 2072263 | 6 | |
| Deletion | Chr9 | 2985001 | 3087000 | 101999 | 14 |
| Deletion | Chr6 | 3009667 | 3009668 | 1 | |
| Deletion | Chr5 | 9613825 | 9613826 | 1 | |
| Deletion | Chr11 | 10024566 | 10024568 | 2 | |
| Deletion | Chr10 | 18834995 | 18834998 | 3 | LOC_Os10g35240 |
| Deletion | Chr8 | 20686339 | 20686351 | 12 | |
| Deletion | Chr2 | 21080173 | 21080183 | 10 | |
| Deletion | Chr9 | 21768521 | 21768528 | 7 | |
| Deletion | Chr9 | 22760307 | 22760314 | 7 | |
| Deletion | Chr1 | 30905099 | 30905101 | 2 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 16937422 | 16937423 | 2 | |
| Insertion | Chr4 | 3739127 | 3739127 | 1 | |
| Insertion | Chr9 | 17230360 | 17230380 | 21 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 1146567 | 1146884 | |
| Inversion | Chr9 | 2891671 | 2973749 | |
| Inversion | Chr9 | 2973771 | 3340911 | 2 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 6162600 | Chr2 | 25084210 | LOC_Os11g11140 |
| Translocation | Chr8 | 8401663 | Chr5 | 3026636 | |
| Translocation | Chr8 | 8401666 | Chr4 | 22687681 | |
| Translocation | Chr11 | 23278362 | Chr5 | 27174266 | |
| Translocation | Chr6 | 30707323 | Chr2 | 31356684 | LOC_Os06g50760 |