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| Mutant Information |
|---|
| Mutant Name | FN3581-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3581-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31145139 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g54160 |
| SBS | Chr1 | 4342377 | G-A | Homo | ||
| SBS | Chr10 | 11534480 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g22300 |
| SBS | Chr10 | 4948527 | A-T | HET | ||
| SBS | Chr11 | 12945925 | C-T | HET | ||
| SBS | Chr11 | 13170693 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g22910 |
| SBS | Chr11 | 26740006 | G-A | HET | ||
| SBS | Chr12 | 26649557 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g42876 |
| SBS | Chr2 | 21927073 | C-T | HET | ||
| SBS | Chr2 | 21978201 | G-A | HET | ||
| SBS | Chr2 | 8335348 | T-A | Homo | ||
| SBS | Chr4 | 1627048 | C-A | HET | ||
| SBS | Chr4 | 18120646 | A-T | HET | ||
| SBS | Chr4 | 19829577 | A-T | HET | ||
| SBS | Chr4 | 4335885 | G-A | HET | ||
| SBS | Chr4 | 6607265 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g12040 |
| SBS | Chr4 | 6818514 | A-G | HET | ||
| SBS | Chr5 | 12140692 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g20710 |
| SBS | Chr6 | 11291188 | C-T | HET | ||
| SBS | Chr6 | 11592335 | G-A | HET | ||
| SBS | Chr6 | 15658386 | C-T | HET | ||
| SBS | Chr7 | 26604054 | A-G | Homo | ||
| SBS | Chr7 | 8534667 | G-T | HET | ||
| SBS | Chr8 | 28291831 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g45060 |
| SBS | Chr8 | 6701926 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g11430 |
| SBS | Chr9 | 10176363 | T-A | HET |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 5135001 | 5363000 | 227999 | 35 |
| Deletion | Chr7 | 9597295 | 9597333 | 38 | LOC_Os07g16400 |
| Deletion | Chr10 | 14467356 | 14467357 | 1 | |
| Deletion | Chr3 | 16432360 | 16432361 | 1 | |
| Deletion | Chr3 | 16956371 | 16956450 | 79 | |
| Deletion | Chr6 | 19660768 | 19660770 | 2 | |
| Deletion | Chr11 | 21708352 | 21708353 | 1 | |
| Deletion | Chr11 | 21787639 | 21787644 | 5 | |
| Deletion | Chr7 | 25342056 | 25342068 | 12 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr8 | 22164943 | 22164944 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 15271481 | 15713189 | LOC_Os07g27100 |
| Inversion | Chr10 | 20694066 | 20694399 | LOC_Os10g38860 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 2166016 | Chr7 | 15714343 | |
| Translocation | Chr11 | 2166031 | Chr7 | 15714061 | |
| Translocation | Chr8 | 7357081 | Chr7 | 15714046 | |
| Translocation | Chr10 | 8066806 | Chr5 | 14979488 | 2 |
| Translocation | Chr12 | 14664441 | Chr8 | 7233128 | LOC_Os08g12290 |
| Translocation | Chr12 | 14664444 | Chr8 | 7356587 | |
| Translocation | Chr6 | 20931162 | Chr1 | 22551268 | LOC_Os06g35870 |