Search Results
| Mutant Information |
|---|
| Mutant Name | FN3591-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3591-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 4029341 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g08250 |
| SBS | Chr1 | 7431039 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g13320 |
| SBS | Chr1 | 11574641 | T-C | Homo | ||
| SBS | Chr1 | 15597064 | C-T | Homo | ||
| SBS | Chr2 | 4214445 | C-A | HET | ||
| SBS | Chr2 | 7804110 | C-T | HET | ||
| SBS | Chr2 | 15977241 | C-A | HET | ||
| SBS | Chr2 | 19682272 | A-T | Homo | ||
| SBS | Chr3 | 18758219 | C-T | HET | ||
| SBS | Chr4 | 16042447 | C-T | Homo | ||
| SBS | Chr4 | 21206241 | T-A | Homo | ||
| SBS | Chr4 | 25808687 | C-T | Homo | ||
| SBS | Chr4 | 30128951 | T-A | Homo | ||
| SBS | Chr5 | 12922688 | A-C | Homo | ||
| SBS | Chr6 | 2339878 | A-G | HET | ||
| SBS | Chr6 | 9771662 | C-T | HET | ||
| SBS | Chr6 | 14523121 | G-T | HET | ||
| SBS | Chr6 | 23065334 | C-T | HET | ||
| SBS | Chr7 | 17143532 | G-A | Homo | ||
| SBS | Chr8 | 14305170 | C-A | HET | ||
| SBS | Chr9 | 3197089 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g06719 |
| SBS | Chr9 | 3567356 | A-G | HET | ||
| SBS | Chr9 | 3567358 | G-A | HET | ||
| SBS | Chr9 | 13680208 | C-T | HET | ||
| SBS | Chr9 | 20564720 | A-T | Homo | ||
| SBS | Chr10 | 4565002 | A-T | HET | ||
| SBS | Chr10 | 6375177 | T-A | HET | ||
| SBS | Chr10 | 15409750 | T-C | HET | ||
| SBS | Chr10 | 17906891 | T-A | HET | ||
| SBS | Chr11 | 9955194 | A-T | HET | ||
| SBS | Chr12 | 2675333 | T-C | HET | ||
| SBS | Chr12 | 9761746 | C-T | HET | ||
| SBS | Chr12 | 20566861 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g34050 |
| SBS | Chr12 | 24176949 | C-A | HET | ||
| SBS | Chr12 | 25711271 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g41510 |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 607187 | 607191 | 4 | |
| Deletion | Chr5 | 6703729 | 6703731 | 2 | |
| Deletion | Chr7 | 6775001 | 6784000 | 8999 | 2 |
| Deletion | Chr11 | 10360934 | 10360935 | 1 | LOC_Os11g18366 |
| Deletion | Chr7 | 13129449 | 13129462 | 13 | |
| Deletion | Chr5 | 14631057 | 14631072 | 15 | |
| Deletion | Chr5 | 15515579 | 15515580 | 1 | LOC_Os05g26730 |
| Deletion | Chr2 | 15976172 | 15976176 | 4 | |
| Deletion | Chr11 | 18925864 | 18925866 | 2 | |
| Deletion | Chr1 | 19086248 | 19086249 | 1 | |
| Deletion | Chr3 | 20202146 | 20202150 | 4 | LOC_Os03g36470 |
| Deletion | Chr11 | 20798545 | 20798552 | 7 | LOC_Os11g35490 |
| Deletion | Chr7 | 22099381 | 22099382 | 1 | |
| Deletion | Chr6 | 23326008 | 23326009 | 1 | |
| Deletion | Chr2 | 28688625 | 28688630 | 5 | |
| Deletion | Chr3 | 32026673 | 32026684 | 11 | |
| Deletion | Chr2 | 34355114 | 34355116 | 2 | LOC_Os02g56140 |
| Deletion | Chr1 | 39466975 | 39466988 | 13 |
Insertions: 6
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 3841726 | 4167813 | LOC_Os05g07260 |
| Inversion | Chr5 | 3841730 | 4167842 | LOC_Os05g07260 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 19619708 | Chr4 | 2530360 | 2 |
| Translocation | Chr5 | 20828151 | Chr4 | 31852383 |