Search Results

Mutant Information

Mutant Name	FN3593-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3593-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16882650	C-A	HET
SBS	Chr2	3866912	T-A	HET
SBS	Chr2	7313400	G-T	HET
SBS	Chr3	14601803	C-T	HET
SBS	Chr3	18699629	G-C	HET
SBS	Chr3	19149394	G-A	HET
SBS	Chr3	28984926	A-G	Homo
SBS	Chr4	18897936	A-G	HET
SBS	Chr4	30196718	C-T	HET
SBS	Chr4	30980398	C-A	HET
SBS	Chr5	8421932	G-T	Homo
SBS	Chr5	12463801	C-T	HET	STOP_GAINED	LOC_Os05g21190
SBS	Chr5	16263864	C-T	HET
SBS	Chr5	16446218	C-T	HET
SBS	Chr10	788588	C-G	Homo
SBS	Chr10	4372137	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g08070
SBS	Chr10	16303643	A-T	HET
SBS	Chr12	10800413	G-T	HET
SBS	Chr12	11587255	C-T	HET

Deletions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	201627	201629	2
Deletion	Chr4	992001	1038000	45999	9
Deletion	Chr12	2952385	2952417	32
Deletion	Chr8	10328809	10328811	2
Deletion	Chr7	21272633	21272634	1
Deletion	Chr8	22669694	22669697	3
Deletion	Chr8	27625588	27625590	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	23657469	23657471	3
Insertion	Chr12	24691399	24691402	4	LOC_Os12g39950

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	28423323	29394473	LOC_Os01g49420

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	6760965	Chr7	6428257	LOC_Os07g11640
Translocation	Chr8	7125989	Chr7	6387846
Translocation	Chr3	8639611	Chr2	18421835
Translocation	Chr10	15983275	Chr6	369004
Translocation	Chr8	19281537	Chr4	6245543
Translocation	Chr8	19299741	Chr4	6245530	LOC_Os08g31210
Translocation	Chr5	28232891	Chr4	8315792	LOC_Os05g49200