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| Mutant Information |
|---|
| Mutant Name | FN3595-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3595-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21479552 | G-A | HET | ||
| SBS | Chr1 | 2242160 | C-T | HET | ||
| SBS | Chr1 | 2585162 | A-G | HET | ||
| SBS | Chr10 | 18160352 | T-A | Homo | ||
| SBS | Chr11 | 18020526 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g30970 |
| SBS | Chr11 | 8716228 | G-C | HET | ||
| SBS | Chr12 | 13990426 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g24500 |
| SBS | Chr12 | 21741637 | G-A | HET | ||
| SBS | Chr2 | 21776529 | C-A | HET | ||
| SBS | Chr2 | 23738749 | T-A | HET | ||
| SBS | Chr3 | 19980538 | C-T | HET | ||
| SBS | Chr5 | 24651448 | A-G | HET | ||
| SBS | Chr5 | 4485719 | G-A | Homo | ||
| SBS | Chr6 | 13187920 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g22670 |
| SBS | Chr6 | 13187921 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g22670 |
| SBS | Chr6 | 21167504 | C-T | HET | ||
| SBS | Chr6 | 3579756 | C-T | HET | ||
| SBS | Chr6 | 5278603 | T-C | Homo | ||
| SBS | Chr7 | 20525655 | G-C | Homo | ||
| SBS | Chr7 | 23097422 | A-G | Homo | ||
| SBS | Chr7 | 25331356 | G-T | HET | ||
| SBS | Chr8 | 3301250 | T-C | Homo | ||
| SBS | Chr8 | 7645272 | T-C | HET | ||
| SBS | Chr8 | 9424587 | T-C | HET | ||
| SBS | Chr9 | 9129987 | C-G | HET | ||
| SBS | Chr9 | 9180716 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g15130 |
| SBS | Chr9 | 930492 | A-T | HET |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 3350476 | 3350499 | 23 | |
| Deletion | Chr4 | 7447905 | 7447907 | 2 | |
| Deletion | Chr11 | 9701675 | 9701677 | 2 | |
| Deletion | Chr8 | 14416037 | 14416039 | 2 | |
| Deletion | Chr1 | 15688001 | 15747000 | 58999 | 7 |
| Deletion | Chr7 | 19602174 | 19602178 | 4 | |
| Deletion | Chr10 | 20189149 | 20189150 | 1 | |
| Deletion | Chr6 | 21148677 | 21148678 | 1 | LOC_Os06g36140 |
| Deletion | Chr1 | 43246914 | 43246915 | 1 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 5512865 | 5512865 | 1 | |
| Insertion | Chr11 | 22130893 | 22131146 | 254 | |
| Insertion | Chr3 | 22475639 | 22475639 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 1418403 | 1691764 | LOC_Os07g03550 |
| Inversion | Chr8 | 3762028 | 3787782 | |
| Inversion | Chr5 | 24106066 | 24374694 | 2 |
| Inversion | Chr5 | 24106082 | 24374696 | 2 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 2084484 | Chr1 | 15733844 | |
| Translocation | Chr11 | 2084816 | Chr7 | 28021889 | |
| Translocation | Chr11 | 2084818 | Chr1 | 15689073 | |
| Translocation | Chr8 | 10934451 | Chr2 | 6633136 | LOC_Os08g17820 |
| Translocation | Chr10 | 14431791 | Chr1 | 42000252 | 2 |
| Translocation | Chr10 | 14432433 | Chr1 | 42000247 | LOC_Os01g72410 |
| Translocation | Chr10 | 21106534 | Chr4 | 14888754 | LOC_Os10g39510 |
| Translocation | Chr7 | 28021887 | Chr5 | 33528 | LOC_Os05g01010 |
| Translocation | Chr7 | 28022067 | Chr1 | 15689076 |