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Mutant Information

Mutant Name	FN3597-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3597-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15900137	G-A	HET
SBS	Chr1	32406804	G-A	Homo
SBS	Chr1	32406805	C-G	Homo
SBS	Chr1	33746148	G-A	HET
SBS	Chr1	35456832	T-A	Homo
SBS	Chr1	40311439	A-G	HET
SBS	Chr1	6178812	C-A	Homo
SBS	Chr11	3662813	C-T	HET
SBS	Chr11	4745438	A-G	HET
SBS	Chr12	1246732	G-A	HET
SBS	Chr12	25201583	G-T	Homo
SBS	Chr2	20346657	G-T	HET
SBS	Chr6	12982008	A-C	HET
SBS	Chr6	16716694	G-A	Homo	STOP_GAINED	LOC_Os06g29280
SBS	Chr6	25910145	C-A	Homo
SBS	Chr7	157349	G-A	Homo
SBS	Chr8	21252967	T-G	Homo
SBS	Chr8	23577883	G-C	Homo

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	4337283	4337295	12
Deletion	Chr12	7829049	7829058	9
Deletion	Chr3	9769529	9769535	6
Deletion	Chr5	13934529	13934531	2
Deletion	Chr5	16646961	16646964	3	LOC_Os05g28430
Deletion	Chr3	19714245	19714252	7
Deletion	Chr5	22809983	22809997	14
Deletion	Chr12	24366745	24366769	24	LOC_Os12g39540
Deletion	Chr6	25610545	25610549	4
Deletion	Chr2	33997847	33997850	3
Deletion	Chr1	35121672	35121693	21

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	3060239	3060239	1
Insertion	Chr12	17115290	17115290	1
Insertion	Chr2	19774202	19774202	1
Insertion	Chr3	6532810	6532811	2
Insertion	Chr4	18043888	18043889	2	LOC_Os04g30240
Insertion	Chr5	20294655	20294656	2
Insertion	Chr7	28604181	28604181	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	15195662	16049177	2
Inversion	Chr9	20884167	21055491	2
Inversion	Chr9	20884833	21056646

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	8637948	Chr5	8853356	2
Translocation	Chr11	19390293	Chr4	3614421
Translocation	Chr9	20884176	Chr4	30684517	2
Translocation	Chr9	20884827	Chr4	30684496	2
Translocation	Chr11	22922301	Chr6	1553353
Translocation	Chr12	25448146	Chr2	15541329
Translocation	Chr12	25449075	Chr9	21056636