Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11006181	G-T	HET
SBS	Chr1	31790513	C-A	Homo
SBS	Chr11	2684612	T-A	HET
SBS	Chr12	13877547	C-T	HET
SBS	Chr12	14097439	A-G	HET
SBS	Chr12	2768958	C-G	Homo
SBS	Chr2	15806041	C-A	HET
SBS	Chr2	28345700	C-T	HET
SBS	Chr2	28645648	A-G	Homo
SBS	Chr3	16450563	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g28980
SBS	Chr3	7253580	C-T	HET
SBS	Chr4	2719000	G-A	HET
SBS	Chr4	27237986	T-A	Homo
SBS	Chr4	27237987	G-A	Homo
SBS	Chr4	28330300	G-A	Homo
SBS	Chr4	32800120	T-A	Homo
SBS	Chr4	32800121	A-T	Homo
SBS	Chr4	4903966	G-A	HET
SBS	Chr4	9251907	G-A	HET
SBS	Chr5	16994440	C-T	Homo
SBS	Chr5	24829169	G-A	HET
SBS	Chr6	13773083	G-A	HET
SBS	Chr6	24119663	G-A	Homo	STOP_GAINED	LOC_Os06g40480
SBS	Chr6	7711184	A-T	HET
SBS	Chr7	24239814	G-T	HET
SBS	Chr7	24243282	G-T	HET
SBS	Chr7	26078280	T-G	HET
SBS	Chr7	27753570	C-T	HET
SBS	Chr7	9805270	C-T	HET
SBS	Chr8	5718966	T-G	Homo
SBS	Chr8	5948874	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g10244
SBS	Chr8	7757861	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g13060
SBS	Chr8	7757862	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g13060
SBS	Chr9	18560293	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g30458

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	5875725	5875731	6
Deletion	Chr5	6975554	6975557	3
Deletion	Chr11	7576365	7576366	1	LOC_Os11g13770
Deletion	Chr7	10225113	10225116	3
Deletion	Chr11	10355005	10355006	1
Deletion	Chr2	11941383	11941400	17
Deletion	Chr4	13138737	13138743	6
Deletion	Chr1	13194607	13194610	3
Deletion	Chr11	15324520	15324521	1
Deletion	Chr10	15901867	15901874	7
Deletion	Chr12	18103001	18163000	59999	11
Deletion	Chr8	22124192	22124194	2
Deletion	Chr12	23214014	23214015	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	8301322	8301323	2
Insertion	Chr6	31182238	31182239	2
Insertion	Chr6	8170442	8170447	6

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	6785569	6785754
Inversion	Chr9	8159844	8160186
Inversion	Chr11	12663492	12788560	2
Inversion	Chr4	12978371	12982443
Inversion	Chr4	12978935	12982485	2
Inversion	Chr11	19390709	19639505	2
Inversion	Chr3	30088325	30088660	LOC_Os03g52430

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2239005	Chr1	2819544
Translocation	Chr10	2607341	Chr6	15332598	LOC_Os10g05270
Translocation	Chr4	4162802	Chr1	20756020	2
Translocation	Chr7	14188060	Chr1	36103417	2
Translocation	Chr7	14188081	Chr1	36102508	2
Translocation	Chr8	15189589	Chr6	11230385	2
Translocation	Chr2	16659498	Chr1	23143179
Translocation	Chr8	20584384	Chr6	1072418
Translocation	Chr7	22917906	Chr5	14513561	2
Translocation	Chr12	23667478	Chr1	14627797	2
Translocation	Chr7	23686423	Chr6	15356398	2
Translocation	Chr7	23686622	Chr6	15356400	2

Main menu