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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr12	22269512	C-A	Homo
SBS	Chr2	11086953	G-C	Homo
SBS	Chr3	10400058	T-C	HET
SBS	Chr3	18818890	C-G	HET
SBS	Chr3	5024961	G-A	HET
SBS	Chr3	6809566	G-A	HET
SBS	Chr4	12738443	T-C	Homo
SBS	Chr4	26781305	C-T	HET
SBS	Chr5	14612448	C-T	HET
SBS	Chr6	13197621	G-A	Homo
SBS	Chr6	21161744	G-A	HET
SBS	Chr6	21318866	G-T	HET
SBS	Chr6	21324893	C-T	HET
SBS	Chr6	9704322	C-T	HET
SBS	Chr7	20165950	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g33730
SBS	Chr7	4390529	T-C	Homo
SBS	Chr7	7296632	C-T	Homo
SBS	Chr8	11002016	G-A	Homo
SBS	Chr8	19595189	C-T	HET
SBS	Chr8	5010862	T-C	HET
SBS	Chr9	20328913	G-A	HET

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Deletion	Chr7	2147491	2147494	3
Deletion	Chr6	6645585	6645587	2
Deletion	Chr7	6859043	6859061	18
Deletion	Chr3	16916890	16916891	1
Deletion	Chr11	18894525	18894528	3
Deletion	Chr3	21032540	21032543	3
Deletion	Chr4	29480086	29480089	3
Deletion	Chr3	35278726	35278727	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	8857747	8857750	4
Insertion	Chr5	4918937	4918940	4

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	9014833	9083468	LOC_Os03g16334
Inversion	Chr3	9083471	9103790
Inversion	Chr1	13002243	13319513	2
Inversion	Chr1	13002246	13320000	2
Inversion	Chr2	31310861	31439070	LOC_Os02g51180
Inversion	Chr2	31310867	31439082	LOC_Os02g51180

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	19879102	Chr6	21412722
Translocation	Chr8	25026533	Chr1	13319992	LOC_Os01g23680
Translocation	Chr8	25026550	Chr1	13319518	LOC_Os01g23680

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