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Mutant Information

Mutant Name	FN3601-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3601-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23516883	T-C	Homo
SBS	Chr1	23516922	T-A	Homo
SBS	Chr10	5384461	G-A	HET
SBS	Chr10	8080976	T-C	HET
SBS	Chr11	24974887	C-T	HET
SBS	Chr11	27195887	A-G	HET
SBS	Chr12	8683107	C-T	HET
SBS	Chr2	22986179	A-G	Homo
SBS	Chr2	8381817	C-G	HET
SBS	Chr3	6931893	A-T	Homo
SBS	Chr4	1630246	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03690
SBS	Chr6	18105878	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g31160
SBS	Chr7	27413849	G-A	HET
SBS	Chr8	27486290	C-T	HET
SBS	Chr8	8948892	G-A	HET
SBS	Chr9	14427476	T-G	HET
SBS	Chr9	8893529	C-T	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1056717	1056718	1
Deletion	Chr12	2654615	2654631	16
Deletion	Chr11	4229751	4229753	2
Deletion	Chr3	6386484	6386494	10
Deletion	Chr12	11260868	11260871	3
Deletion	Chr12	14574001	14684000	109999	11
Deletion	Chr5	15318381	15318384	3	LOC_Os05g26330
Deletion	Chr11	15381799	15381814	15
Deletion	Chr10	16135795	16135796	1	LOC_Os10g30930
Deletion	Chr12	20998031	20998039	8
Deletion	Chr9	21689475	21689491	16
Deletion	Chr6	29874129	29874143	14
Deletion	Chr3	33179722	33179731	9
Deletion	Chr4	33245245	33245251	6	LOC_Os04g55840

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	10166845	10166845	1
Insertion	Chr4	1579844	1579943	100
Insertion	Chr5	11146288	11146288	1
Insertion	Chr6	21857133	21857150	18

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	9917834	Chr4	6963416	LOC_Os12g17320
Translocation	Chr5	12724568	Chr4	14980018
Translocation	Chr6	22799945	Chr2	17256809	LOC_Os06g38470