Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3606-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3606-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 23394147 | G-C | HET | ||
| SBS | Chr1 | 32949931 | T-C | HET | ||
| SBS | Chr10 | 10048349 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g20030 |
| SBS | Chr10 | 8311528 | C-T | HET | ||
| SBS | Chr11 | 20246379 | C-T | HET | ||
| SBS | Chr11 | 20246380 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g34590 |
| SBS | Chr11 | 897795 | G-A | HET | ||
| SBS | Chr12 | 11615303 | C-T | HET | ||
| SBS | Chr12 | 18281329 | G-T | Homo | ||
| SBS | Chr12 | 9738757 | T-A | HET | ||
| SBS | Chr2 | 1631538 | A-G | HET | ||
| SBS | Chr2 | 22736551 | G-A | HET | ||
| SBS | Chr2 | 4871756 | A-C | HET | ||
| SBS | Chr3 | 26057336 | C-T | Homo | ||
| SBS | Chr3 | 32673303 | C-T | HET | ||
| SBS | Chr3 | 32673305 | C-A | HET | ||
| SBS | Chr3 | 9129552 | C-T | HET | ||
| SBS | Chr4 | 16644533 | G-A | Homo | ||
| SBS | Chr4 | 17514982 | T-C | HET | ||
| SBS | Chr4 | 29246645 | T-G | HET | ||
| SBS | Chr5 | 18953744 | C-A | HET | ||
| SBS | Chr5 | 6152162 | A-G | Homo | ||
| SBS | Chr8 | 18871589 | G-C | HET | ||
| SBS | Chr8 | 19639169 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g31680 |
| SBS | Chr8 | 7664785 | G-A | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1116956 | 1116962 | 6 | |
| Deletion | Chr5 | 1206001 | 1225000 | 18999 | 3 |
| Deletion | Chr7 | 1640955 | 1640968 | 13 | LOC_Os07g03920 |
| Deletion | Chr7 | 4845401 | 4845402 | 1 | LOC_Os07g09240 |
| Deletion | Chr4 | 6403148 | 6403157 | 9 | |
| Deletion | Chr5 | 6906118 | 6906119 | 1 | |
| Deletion | Chr5 | 7050522 | 7050526 | 4 | LOC_Os05g12280 |
| Deletion | Chr4 | 13541927 | 13541929 | 2 | |
| Deletion | Chr6 | 13915538 | 13915549 | 11 | LOC_Os06g23810 |
| Deletion | Chr6 | 24147699 | 24147720 | 21 | |
| Deletion | Chr3 | 26026001 | 26050000 | 23999 | 3 |
| Deletion | Chr6 | 29309746 | 29309760 | 14 | LOC_Os06g48440 |
Insertions: 5
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 9174872 | 9422162 | LOC_Os03g16950 |
| Inversion | Chr11 | 16376753 | 17008515 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 4757291 | Chr8 | 10071806 | |
| Translocation | Chr3 | 25611576 | Chr1 | 18784744 |