Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	39352093	G-T	HET
SBS	Chr1	5083493	T-A	HET
SBS	Chr10	22883494	T-C	HET
SBS	Chr11	12632710	T-C	Homo
SBS	Chr11	1538054	A-T	Homo
SBS	Chr11	1598976	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g03960
SBS	Chr2	25092098	C-T	HET
SBS	Chr3	14056259	A-G	HET
SBS	Chr3	22608522	G-T	HET
SBS	Chr3	27367936	C-T	HET
SBS	Chr3	28294383	G-A	HET
SBS	Chr3	28295018	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g49690
SBS	Chr3	9863238	T-C	Homo
SBS	Chr4	12573793	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g22200
SBS	Chr4	1951114	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04190
SBS	Chr4	20820018	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g34370
SBS	Chr4	3567952	T-A	Homo
SBS	Chr4	3567953	G-A	Homo
SBS	Chr4	9682311	A-T	Homo
SBS	Chr5	18139011	A-G	Homo
SBS	Chr5	3835366	A-T	Homo
SBS	Chr5	3835368	G-T	Homo
SBS	Chr6	11704478	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g20380
SBS	Chr6	12828976	G-A	HET
SBS	Chr7	1065828	A-G	HET
SBS	Chr7	16691728	C-T	HET
SBS	Chr7	26850889	T-G	Homo
SBS	Chr7	29388832	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g49100
SBS	Chr7	4436384	G-T	HET
SBS	Chr7	8998042	C-T	HET
SBS	Chr8	23890783	C-T	HET
SBS	Chr8	3980215	C-T	HET
SBS	Chr9	12081052	T-C	Homo
SBS	Chr9	1234472	G-T	Homo
SBS	Chr9	1969715	C-T	HET
SBS	Chr9	895661	T-A	Homo

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	99978	99985	7	LOC_Os06g01090
Deletion	Chr8	101383	101385	2
Deletion	Chr7	496018	496020	2
Deletion	Chr6	1562688	1562696	8
Deletion	Chr6	1845903	1845906	3
Deletion	Chr4	3083535	3083536	1
Deletion	Chr4	3567976	3567984	8
Deletion	Chr10	3616583	3616584	1
Deletion	Chr6	5105891	5105903	12
Deletion	Chr2	5952134	5952150	16
Deletion	Chr6	6008052	6008053	1	LOC_Os06g11400
Deletion	Chr4	9646411	9646412	1
Deletion	Chr1	10733676	10733678	2
Deletion	Chr3	15835563	15835564	1
Deletion	Chr9	18605425	18605428	3
Deletion	Chr5	18897398	18897415	17
Deletion	Chr3	21066271	21066279	8
Deletion	Chr10	21782853	21782854	1
Deletion	Chr4	22352886	22352892	6
Deletion	Chr6	22407523	22407528	5	LOC_Os06g37850
Deletion	Chr10	23031871	23031872	1
Deletion	Chr8	24459001	24493000	33999	4
Deletion	Chr4	29469001	29477000	7999	LOC_Os04g49380
Deletion	Chr4	31674841	31674849	8
Deletion	Chr1	39206043	39206044	1
Deletion	Chr1	41316859	41316861	2
Deletion	Chr1	42610433	42610444	11

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	15723072	15723073	2
Insertion	Chr6	8569086	8569087	2
Insertion	Chr9	17004035	17004035	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	21823764	21824102
Inversion	Chr8	23681203	24491356
Inversion	Chr7	24675013	25116864
Inversion	Chr7	24675018	25116861
Inversion	Chr1	29527912	30400190	LOC_Os01g52864
Inversion	Chr1	29527913	30400193	LOC_Os01g52864

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	161135	Chr1	43066624
Translocation	Chr9	11292214	Chr6	12695530

Main menu