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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4213436	G-A	Homo
SBS	Chr1	22811193	C-T	HET
SBS	Chr1	38001320	C-T	Homo
SBS	Chr2	17357865	A-G	HET
SBS	Chr2	18522222	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g31010
SBS	Chr2	31302275	A-T	HET
SBS	Chr3	5824086	A-G	Homo
SBS	Chr3	6403715	C-T	Homo
SBS	Chr3	16921942	A-G	HET
SBS	Chr4	6516460	C-T	Homo
SBS	Chr5	15359138	A-G	Homo
SBS	Chr5	23434628	C-A	HET
SBS	Chr5	23792989	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g40520
SBS	Chr5	29711684	C-T	HET
SBS	Chr6	1232535	C-T	HET
SBS	Chr6	22399914	G-A	Homo
SBS	Chr7	3407124	A-T	HET
SBS	Chr7	8242696	A-T	Homo
SBS	Chr7	9199806	C-T	HET
SBS	Chr7	12474509	G-T	HET
SBS	Chr7	16462124	T-C	HET
SBS	Chr8	1334444	T-G	HET
SBS	Chr8	11647205	G-A	Homo
SBS	Chr9	1556132	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g03220
SBS	Chr9	3582748	G-A	HET	STOP_GAINED	LOC_Os09g07290
SBS	Chr9	4167954	A-G	HET
SBS	Chr9	22225618	C-A	Homo
SBS	Chr10	22247676	G-C	HET
SBS	Chr11	3862674	G-A	HET
SBS	Chr11	6524866	C-T	HET
SBS	Chr11	8688934	C-G	HET
SBS	Chr11	17124911	T-C	Homo
SBS	Chr11	18863094	C-T	Homo
SBS	Chr11	26123673	C-T	HET
SBS	Chr12	1691691	A-G	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	767600	767604	4
Deletion	Chr10	3138603	3138610	7
Deletion	Chr7	3735049	3735057	8
Deletion	Chr7	4279655	4279656	1
Deletion	Chr7	7437652	7437656	4
Deletion	Chr11	7849001	8165000	315999	45
Deletion	Chr1	10507173	10507176	3
Deletion	Chr9	10944340	10944347	7
Deletion	Chr8	12985850	12986006	156
Deletion	Chr9	14052947	14052961	14
Deletion	Chr7	14484928	14484937	9
Deletion	Chr6	17893607	17893614	7
Deletion	Chr12	24362878	24362879	1
Deletion	Chr4	30751417	30751418	1	LOC_Os04g51860
Deletion	Chr4	35207901	35207904	3	LOC_Os04g59190
Deletion	Chr1	38781041	38781043	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	25245398	25245399	2
Insertion	Chr8	26027504	26027505	2
Insertion	Chr10	2066466	2066467	2
Insertion	Chr2	23351769	23351769	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	18135935	18136253
Inversion	Chr10	22373813	22793026	2
Inversion	Chr10	22373820	22793134	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	6368198	Chr4	16082280	2
Translocation	Chr11	8165664	Chr2	24397992	2
Translocation	Chr4	34971642	Chr2	22516731

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