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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19106605	G-A	Homo
SBS	Chr1	37123152	C-T	HET
SBS	Chr1	41960687	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g72340
SBS	Chr2	5630343	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g10700
SBS	Chr2	30814420	C-T	Homo
SBS	Chr3	1032533	C-A	HET
SBS	Chr3	11366671	G-T	HET
SBS	Chr3	15400713	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g26930
SBS	Chr3	26309962	G-A	Homo
SBS	Chr5	14910573	C-T	HET
SBS	Chr6	5457328	A-T	Homo
SBS	Chr6	16337015	G-A	Homo
SBS	Chr7	6911741	A-C	HET
SBS	Chr7	22350814	G-C	Homo
SBS	Chr8	22739455	G-A	HET
SBS	Chr8	22739456	C-A	HET
SBS	Chr8	26293275	T-C	HET
SBS	Chr8	27779621	G-A	HET
SBS	Chr9	21075081	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g36540
SBS	Chr10	871523	C-T	HET
SBS	Chr10	5835181	A-T	Homo
SBS	Chr11	20499396	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g34970
SBS	Chr11	23520433	A-T	Homo
SBS	Chr12	5202279	C-T	HET
SBS	Chr12	5366536	A-G	HET
SBS	Chr12	11649732	C-T	HET
SBS	Chr12	25187538	G-A	HET

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1111001	1146000	34999	5
Deletion	Chr6	1383789	1383794	5
Deletion	Chr6	1476001	1482000	5999	2
Deletion	Chr4	2800971	2800974	3
Deletion	Chr3	3127001	3154000	26999	6
Deletion	Chr4	7539001	7580000	40999	5
Deletion	Chr5	10415331	10415336	5
Deletion	Chr12	20494019	20494020	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	1943386	1943386	1
Insertion	Chr5	500547	500559	13
Insertion	Chr7	26765375	26765380	6
Insertion	Chr10	13342160	13342161	2	LOC_Os10g25750
Insertion	Chr8	8901349	8901350	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	712873	1145801	LOC_Os12g02260
Inversion	Chr12	14839069	14892407	LOC_Os12g25640
Inversion	Chr6	28765840	29086196	2

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	1475812	Chr4	9052860	LOC_Os04g16640
Translocation	Chr6	1483037	Chr3	24713692	LOC_Os06g03750
Translocation	Chr4	9053527	Chr3	24729254	LOC_Os03g44010
Translocation	Chr12	10156934	Chr1	3091685	LOC_Os01g06560
Translocation	Chr12	12548547	Chr10	18187111	LOC_Os12g22260
Translocation	Chr12	19763183	Chr5	15788925
Translocation	Chr8	21774795	Chr2	5969133
Translocation	Chr11	23136456	Chr1	23521400	LOC_Os11g38870
Translocation	Chr7	27769892	Chr1	29676879
Translocation	Chr11	28241065	Chr7	25183019

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