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Mutant Information

Mutant Name	FN3632-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3632-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 50

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11103994	C-T	HET
SBS	Chr1	17374522	T-A	HET
SBS	Chr1	28986879	G-A	HET
SBS	Chr1	4383483	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g08750
SBS	Chr10	11575072	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g22370
SBS	Chr10	17171143	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g32790
SBS	Chr11	2314168	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g05220
SBS	Chr11	2314169	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g05220
SBS	Chr12	2221028	A-G	HET
SBS	Chr12	26400197	T-G	Homo
SBS	Chr2	13060267	A-G	HET
SBS	Chr2	17125692	G-A	HET
SBS	Chr2	17151748	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g28970
SBS	Chr2	21379204	A-G	HET
SBS	Chr2	24575787	G-A	Homo
SBS	Chr2	26600783	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g44070
SBS	Chr3	13059247	T-C	HET
SBS	Chr3	15440266	C-T	HET
SBS	Chr3	21942043	G-T	HET
SBS	Chr3	29296956	T-A	HET
SBS	Chr3	6848612	T-C	HET
SBS	Chr3	6946105	C-T	HET
SBS	Chr3	9292431	A-T	HET
SBS	Chr4	1336594	G-A	HET
SBS	Chr4	18487807	T-C	HET
SBS	Chr4	23297364	A-T	Homo
SBS	Chr4	25656932	G-A	Homo
SBS	Chr4	9335967	T-C	HET
SBS	Chr5	11973500	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20410
SBS	Chr6	24479789	G-A	Homo
SBS	Chr6	5230275	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g10210
SBS	Chr6	5230276	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g10210
SBS	Chr7	14116871	T-A	HET
SBS	Chr7	16443538	G-C	Homo
SBS	Chr7	16737687	T-C	HET
SBS	Chr7	16894448	C-T	HET
SBS	Chr7	16894466	C-A	HET
SBS	Chr7	18152219	C-T	HET
SBS	Chr7	20748453	C-G	HET
SBS	Chr7	5004942	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g09480
SBS	Chr8	11652742	G-T	HET
SBS	Chr8	17155824	T-C	HET
SBS	Chr8	18297682	A-G	HET
SBS	Chr8	21351702	A-T	HET
SBS	Chr8	25465930	A-G	HET
SBS	Chr8	3680724	A-C	Homo
SBS	Chr9	1687017	T-A	HET
SBS	Chr9	19717688	T-G	Homo
SBS	Chr9	6364593	C-A	Homo
SBS	Chr9	8172648	A-G	HET

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	407020	407021	1
Deletion	Chr8	2449093	2449094	1
Deletion	Chr4	2802354	2802361	7
Deletion	Chr3	3299707	3299708	1	LOC_Os03g06550
Deletion	Chr2	3991750	3991754	4
Deletion	Chr12	4391689	4391693	4
Deletion	Chr7	4925942	4925957	15
Deletion	Chr1	5108652	5108653	1
Deletion	Chr2	5187990	5187991	1
Deletion	Chr12	5394176	5394181	5
Deletion	Chr11	6121003	6121014	11	LOC_Os11g11070
Deletion	Chr10	6473780	6473781	1
Deletion	Chr3	8628023	8628037	14
Deletion	Chr7	9987441	9987445	4
Deletion	Chr8	13323001	13398000	74999	9
Deletion	Chr4	14673962	14673963	1
Deletion	Chr1	17955823	17955838	15
Deletion	Chr1	20347846	20347847	1
Deletion	Chr12	20352311	20352315	4
Deletion	Chr5	20494682	20494690	8
Deletion	Chr8	23356137	23356138	1
Deletion	Chr2	24651275	24651276	1
Deletion	Chr8	25954094	25954097	3
Deletion	Chr6	26432172	26432179	7
Deletion	Chr8	28407348	28407369	21	LOC_Os08g45240
Deletion	Chr2	30216881	30216882	1
Deletion	Chr2	33782173	33782179	6
Deletion	Chr3	34493001	34518000	24999	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	24093373	24093373	1
Insertion	Chr12	22907764	22907765	2
Insertion	Chr8	28366463	28366463	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11988134	11988433	LOC_Os03g21070
Inversion	Chr6	21751152	21751526	LOC_Os06g36910

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	6265147	Chr2	11770524
Translocation	Chr6	17874850	Chr5	12666964
Translocation	Chr11	27705540	Chr5	23588498	2

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