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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1746290	T-C	HET
SBS	Chr1	14844151	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g26190
SBS	Chr2	7808244	A-T	Homo
SBS	Chr2	26130028	G-A	HET
SBS	Chr2	26130029	G-A	HET
SBS	Chr2	27160305	T-A	HET
SBS	Chr3	8990792	G-A	Homo
SBS	Chr3	10273272	A-G	HET
SBS	Chr3	25222853	G-T	Homo
SBS	Chr3	27934752	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g49030
SBS	Chr3	32580316	A-G	HET
SBS	Chr4	8233058	G-C	HET
SBS	Chr4	11322481	C-T	HET
SBS	Chr4	23972682	G-A	HET
SBS	Chr5	2447345	A-T	HET
SBS	Chr5	10284247	A-G	HET
SBS	Chr5	13765444	G-A	HET
SBS	Chr5	24780234	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g42350
SBS	Chr6	9206062	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g16160
SBS	Chr6	15022314	T-C	Homo
SBS	Chr6	16205704	C-T	HET
SBS	Chr6	27436629	C-T	HET
SBS	Chr6	29227561	C-A	HET
SBS	Chr7	6368225	C-G	HET
SBS	Chr7	9284158	C-G	HET
SBS	Chr7	11799600	T-C	HET
SBS	Chr7	13720228	G-C	HET
SBS	Chr7	22819039	G-A	Homo
SBS	Chr8	5690097	A-G	HET
SBS	Chr8	8035846	C-G	HET
SBS	Chr8	8058461	G-A	HET
SBS	Chr8	21272949	G-A	HET
SBS	Chr9	4973436	G-A	Homo
SBS	Chr9	9944491	A-G	HET
SBS	Chr9	11200189	T-C	HET
SBS	Chr10	6057882	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g10950
SBS	Chr10	21190817	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g39660
SBS	Chr11	8939276	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g16248
SBS	Chr11	17016676	A-C	Homo
SBS	Chr11	19316845	A-G	HET
SBS	Chr12	2296726	G-C	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	9400561	9400574	13
Deletion	Chr2	10074660	10074661	1
Deletion	Chr5	11464001	11512000	47999	8
Deletion	Chr11	15695868	15695870	2
Deletion	Chr2	17471684	17471692	8
Deletion	Chr10	18282561	18282562	1
Deletion	Chr12	20040670	20040671	1
Deletion	Chr6	20245573	20245583	10
Deletion	Chr6	24553001	24702000	148999	16
Deletion	Chr6	24854001	24958000	103999	20
Deletion	Chr7	25973709	25973710	1
Deletion	Chr7	27397173	27397182	9
Deletion	Chr2	28909001	29032000	122999	18
Deletion	Chr6	28941001	28972000	30999	9
Deletion	Chr6	29745033	29745034	1
Deletion	Chr3	30134965	30134974	9
Deletion	Chr3	32031001	32042000	10999	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	30643102	30643103	2
Insertion	Chr9	3561176	3561176	1
Insertion	Chr11	15635126	15635128	3

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6045926	6368343
Inversion	Chr4	6368345	6692920	LOC_Os04g12140
Inversion	Chr4	17013610	17047855
Inversion	Chr6	24538008	24854389
Inversion	Chr6	24703854	24958376	LOC_Os06g41670

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2163974	Chr1	37409969
Translocation	Chr5	2777013	Chr4	3631573
Translocation	Chr8	5448038	Chr5	11444533	LOC_Os08g09390
Translocation	Chr8	5448039	Chr5	11442051	LOC_Os08g09390
Translocation	Chr10	6068678	Chr8	17058289
Translocation	Chr9	8289874	Chr6	11646603
Translocation	Chr11	23663042	Chr6	11605812
Translocation	Chr6	24702055	Chr2	33545696	LOC_Os02g54770
Translocation	Chr6	24703841	Chr2	33545687	LOC_Os02g54770
Translocation	Chr11	28627443	Chr4	35224945
Translocation	Chr4	31353371	Chr2	32187637

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