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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11228310	G-C	HET
SBS	Chr1	11604185	G-A	Homo
SBS	Chr1	18342251	T-A	HET
SBS	Chr2	7888777	A-G	Homo
SBS	Chr2	13038327	T-C	Homo
SBS	Chr2	24248633	C-T	HET
SBS	Chr2	25745929	G-C	Homo
SBS	Chr2	27174342	A-G	HET
SBS	Chr3	1939150	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04220
SBS	Chr3	9354991	T-A	HET
SBS	Chr4	6266668	G-A	HET
SBS	Chr4	9836321	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17890
SBS	Chr4	11632753	G-C	HET
SBS	Chr4	26213323	T-C	Homo
SBS	Chr5	24534950	G-C	HET
SBS	Chr5	29073084	A-T	HET
SBS	Chr6	5029825	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g09880
SBS	Chr6	5036662	G-A	HET
SBS	Chr6	5592641	T-C	HET
SBS	Chr7	3377017	C-T	HET
SBS	Chr7	23633667	T-G	HET
SBS	Chr7	27370944	G-T	HET
SBS	Chr8	7151052	G-T	HET
SBS	Chr8	10714669	G-A	Homo
SBS	Chr9	86212	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01060
SBS	Chr9	4825029	A-G	Homo
SBS	Chr9	9103126	G-C	HET
SBS	Chr9	22421758	A-T	HET
SBS	Chr10	3637448	A-G	HET
SBS	Chr11	2763448	A-G	Homo
SBS	Chr11	7391556	G-T	Homo
SBS	Chr11	10289692	G-T	Homo
SBS	Chr12	17262779	G-A	HET
SBS	Chr12	19197981	G-A	HET

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1220827	1220828	1	LOC_Os10g02960
Deletion	Chr6	1697982	1697985	3
Deletion	Chr5	2127865	2127874	9
Deletion	Chr10	2375872	2375873	1	LOC_Os10g04890
Deletion	Chr3	17637072	17637074	2
Deletion	Chr9	19907857	19907880	23	LOC_Os09g33700
Deletion	Chr5	24538391	24538411	20
Deletion	Chr7	29325001	29367000	41999	5
Deletion	Chr1	32533115	32533122	7

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	29486692	29486693	2
Insertion	Chr1	6163345	6163346	2
Insertion	Chr5	10289552	10289552	1
Insertion	Chr6	19800702	19800703	2
Insertion	Chr7	12147185	12147187	3

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3631653	4158589
Inversion	Chr9	18472425	18472660	LOC_Os09g30350
Inversion	Chr1	24473196	24473665	LOC_Os01g42970
Inversion	Chr5	26517268	26517481
Inversion	Chr2	33193223	33193353	LOC_Os02g54150
Inversion	Chr3	35283383	35283663

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	748802	Chr1	14003012	LOC_Os01g24860
Translocation	Chr10	2239005	Chr1	2819544
Translocation	Chr12	8222334	Chr4	3485624	LOC_Os04g06610
Translocation	Chr6	20716874	Chr2	16763335
Translocation	Chr8	21861945	Chr6	10139916
Translocation	Chr11	24232288	Chr1	14003939	2
Translocation	Chr11	24232304	Chr9	738488	2
Translocation	Chr11	28765030	Chr9	1675472

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