Search Results
| Mutant Information |
|---|
| Mutant Name | FN3651-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3651-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1820465 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g04140 |
| SBS | Chr1 | 22191361 | A-G | HET | ||
| SBS | Chr1 | 39500698 | G-A | HET | ||
| SBS | Chr2 | 18730130 | T-A | HET | ||
| SBS | Chr3 | 12649624 | C-T | Homo | ||
| SBS | Chr3 | 20143741 | T-G | HET | ||
| SBS | Chr3 | 32827836 | C-A | HET | ||
| SBS | Chr5 | 748279 | C-T | HET | STOP_GAINED | LOC_Os05g02320 |
| SBS | Chr5 | 1098151 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g02960 |
| SBS | Chr5 | 4756135 | G-C | HET | ||
| SBS | Chr5 | 5352411 | T-C | HET | ||
| SBS | Chr5 | 6983912 | G-A | HET | ||
| SBS | Chr5 | 14050171 | A-G | Homo | ||
| SBS | Chr6 | 5555706 | C-G | Homo | ||
| SBS | Chr6 | 24828575 | T-A | HET | ||
| SBS | Chr6 | 28840240 | T-A | HET | ||
| SBS | Chr6 | 28840241 | T-A | HET | ||
| SBS | Chr7 | 12287765 | C-T | Homo | ||
| SBS | Chr7 | 16926073 | A-T | HET | ||
| SBS | Chr8 | 10509367 | T-C | HET | ||
| SBS | Chr8 | 25866100 | A-T | Homo | ||
| SBS | Chr9 | 2579694 | C-T | HET | ||
| SBS | Chr10 | 624791 | C-T | HET | ||
| SBS | Chr10 | 9339915 | C-T | Homo | ||
| SBS | Chr10 | 17834032 | G-C | HET | ||
| SBS | Chr11 | 3444785 | T-C | Homo | ||
| SBS | Chr11 | 13214058 | A-T | Homo | ||
| SBS | Chr11 | 23886392 | C-T | Homo | ||
| SBS | Chr12 | 12631594 | C-T | HET | ||
| SBS | Chr12 | 13458967 | G-C | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 327561 | 327562 | 1 | LOC_Os07g01520 |
| Deletion | Chr2 | 3113001 | 3156000 | 42999 | 10 |
| Deletion | Chr8 | 3129401 | 3129402 | 1 | |
| Deletion | Chr2 | 3453805 | 3453807 | 2 | |
| Deletion | Chr8 | 5519936 | 5519938 | 2 | |
| Deletion | Chr1 | 7454097 | 7454101 | 4 | |
| Deletion | Chr3 | 8300568 | 8300570 | 2 | |
| Deletion | Chr9 | 14437846 | 14437857 | 11 | |
| Deletion | Chr3 | 20723001 | 20877000 | 153999 | 18 |
| Deletion | Chr9 | 21488001 | 21567000 | 78999 | 11 |
| Deletion | Chr9 | 21569001 | 21690000 | 120999 | 33 |
| Deletion | Chr9 | 21694001 | 21782000 | 87999 | 17 |
| Deletion | Chr3 | 22799456 | 22799457 | 1 | |
| Deletion | Chr2 | 23428943 | 23428944 | 1 | |
| Deletion | Chr2 | 32348657 | 32348658 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 379397 | 379397 | 1 | |
| Insertion | Chr8 | 23542876 | 23542877 | 2 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 8012764 | 8013034 | LOC_Os04g14304 |
| Inversion | Chr1 | 16852151 | 16896536 | |
| Inversion | Chr3 | 20722534 | 21139921 | 2 |
| Inversion | Chr3 | 20878304 | 21139940 | LOC_Os03g38082 |
| Inversion | Chr2 | 29459807 | 29460047 | LOC_Os02g48116 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 5212055 | Chr1 | 26217213 | 2 |
| Translocation | Chr6 | 10117993 | Chr5 | 21218472 | |
| Translocation | Chr4 | 13171073 | Chr1 | 8783372 | |
| Translocation | Chr11 | 29009952 | Chr3 | 31102152 |