Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3652-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3652-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 30076991 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g52330 |
| SBS | Chr1 | 4492376 | G-A | Homo | ||
| SBS | Chr10 | 13397231 | C-A | Homo | ||
| SBS | Chr10 | 16090777 | G-A | Homo | ||
| SBS | Chr10 | 22733649 | G-T | Homo | ||
| SBS | Chr10 | 4497087 | C-T | HET | ||
| SBS | Chr11 | 13015069 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g22630 |
| SBS | Chr11 | 16454685 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g28540 |
| SBS | Chr11 | 21889829 | C-T | Homo | ||
| SBS | Chr12 | 23716672 | A-T | HET | ||
| SBS | Chr12 | 3627976 | A-G | HET | ||
| SBS | Chr12 | 4336123 | A-G | HET | ||
| SBS | Chr12 | 4336124 | A-T | HET | ||
| SBS | Chr12 | 6536098 | G-T | HET | ||
| SBS | Chr2 | 17688966 | G-A | Homo | ||
| SBS | Chr3 | 24122883 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g43270 |
| SBS | Chr3 | 9415769 | C-T | HET | ||
| SBS | Chr4 | 23711254 | A-G | Homo | ||
| SBS | Chr4 | 26153010 | C-T | HET | ||
| SBS | Chr4 | 27280873 | C-T | Homo | ||
| SBS | Chr5 | 17227409 | A-T | Homo | ||
| SBS | Chr5 | 17736843 | G-A | HET | ||
| SBS | Chr5 | 22168581 | G-A | HET | ||
| SBS | Chr5 | 23676720 | C-T | Homo | ||
| SBS | Chr5 | 5648731 | A-G | HET | ||
| SBS | Chr7 | 19068015 | G-T | HET | ||
| SBS | Chr7 | 79458 | A-T | HET | ||
| SBS | Chr8 | 15214874 | C-T | Homo |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 1 | 15000 | 14999 | 3 |
| Deletion | Chr5 | 5906001 | 6021000 | 114999 | 15 |
| Deletion | Chr5 | 6024001 | 6115000 | 90999 | 9 |
| Deletion | Chr5 | 6120001 | 6191000 | 70999 | 9 |
| Deletion | Chr9 | 6837328 | 6837332 | 4 | LOC_Os09g12100 |
| Deletion | Chr11 | 9836505 | 9836507 | 2 | |
| Deletion | Chr10 | 13349446 | 13349447 | 1 | |
| Deletion | Chr4 | 13575969 | 13575977 | 8 | |
| Deletion | Chr7 | 15272614 | 15272619 | 5 | |
| Deletion | Chr10 | 16161168 | 16161178 | 10 | |
| Deletion | Chr7 | 17019575 | 17019581 | 6 | |
| Deletion | Chr10 | 21363343 | 21363355 | 12 | |
| Deletion | Chr7 | 22679215 | 22679226 | 11 | |
| Deletion | Chr1 | 22855299 | 22855305 | 6 | |
| Deletion | Chr5 | 23684976 | 23684980 | 4 | |
| Deletion | Chr2 | 34388001 | 34411000 | 22999 | 3 |
| Deletion | Chr1 | 41971082 | 41971083 | 1 |
No Insertion
Inversions: 13
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 1175437 | 1175588 | LOC_Os12g03100 |
| Inversion | Chr9 | 1672831 | 1673184 | |
| Inversion | Chr3 | 4957249 | 4957487 | LOC_Os03g09940 |
| Inversion | Chr5 | 7665220 | 7665361 | |
| Inversion | Chr8 | 8309967 | 8310122 | LOC_Os08g13910 |
| Inversion | Chr12 | 13342442 | 13342587 | |
| Inversion | Chr11 | 16515497 | 16772877 | |
| Inversion | Chr11 | 18612962 | 18899951 | LOC_Os11g32070 |
| Inversion | Chr10 | 22340717 | 22340979 | |
| Inversion | Chr4 | 22979827 | 22980016 | LOC_Os04g38680 |
| Inversion | Chr12 | 24335139 | 24335407 | |
| Inversion | Chr4 | 31788754 | 31789009 | LOC_Os04g53380 |
| Inversion | Chr2 | 32628732 | 32628895 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 8114087 | Chr9 | 19170309 | |
| Translocation | Chr11 | 23833237 | Chr4 | 13589819 | |
| Translocation | Chr4 | 26079899 | Chr3 | 22522069 | 2 |