Search Results
| Mutant Information |
|---|
| Mutant Name | FN3656-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3656-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12276062 | G-A | HET | ||
| SBS | Chr1 | 20203030 | C-A | HET | ||
| SBS | Chr1 | 30658442 | C-T | HET | ||
| SBS | Chr1 | 30802764 | G-A | HET | ||
| SBS | Chr2 | 24992930 | A-G | HET | ||
| SBS | Chr3 | 16676090 | T-C | Homo | ||
| SBS | Chr3 | 16676091 | G-T | Homo | ||
| SBS | Chr4 | 7009389 | G-T | HET | ||
| SBS | Chr4 | 33916274 | C-T | HET | ||
| SBS | Chr5 | 1174523 | A-T | HET | ||
| SBS | Chr5 | 11952141 | G-T | HET | ||
| SBS | Chr6 | 12262006 | C-A | HET | ||
| SBS | Chr6 | 19915688 | G-A | HET | ||
| SBS | Chr7 | 11901729 | A-G | HET | ||
| SBS | Chr7 | 12543774 | G-T | HET | ||
| SBS | Chr7 | 26760017 | G-A | Homo | ||
| SBS | Chr8 | 7436851 | C-T | HET | ||
| SBS | Chr8 | 8770964 | A-G | HET | ||
| SBS | Chr9 | 2320597 | A-G | Homo | SPLICE_SITE_DONOR | LOC_Os09g04380 |
| SBS | Chr9 | 5896625 | G-T | Homo | ||
| SBS | Chr9 | 5896630 | A-C | Homo | ||
| SBS | Chr10 | 10433974 | G-A | HET | ||
| SBS | Chr10 | 22905633 | G-T | Homo | ||
| SBS | Chr11 | 19888642 | G-C | Homo | ||
| SBS | Chr12 | 51495 | A-G | HET | ||
| SBS | Chr12 | 130002 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g01220 |
| SBS | Chr12 | 17238172 | C-T | HET | ||
| SBS | Chr12 | 21864162 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g35880 |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 501788 | 501792 | 4 | |
| Deletion | Chr11 | 4376661 | 4376662 | 1 | |
| Deletion | Chr4 | 7019219 | 7019220 | 1 | |
| Deletion | Chr8 | 11387141 | 11387147 | 6 | |
| Deletion | Chr3 | 11891628 | 11891629 | 1 | |
| Deletion | Chr12 | 14137706 | 14137707 | 1 | |
| Deletion | Chr3 | 15305409 | 15305416 | 7 | LOC_Os03g26810 |
| Deletion | Chr3 | 16423493 | 16423500 | 7 | |
| Deletion | Chr8 | 16474622 | 16474623 | 1 | LOC_Os08g26970 |
| Deletion | Chr2 | 19136405 | 19136407 | 2 | |
| Deletion | Chr1 | 20823953 | 20823955 | 2 | |
| Deletion | Chr8 | 22654376 | 22654380 | 4 | LOC_Os08g35920 |
| Deletion | Chr11 | 24141721 | 24141722 | 1 | |
| Deletion | Chr11 | 25618795 | 25618796 | 1 | |
| Deletion | Chr5 | 25954001 | 26117000 | 162999 | 35 |
| Deletion | Chr1 | 26144378 | 26144381 | 3 | LOC_Os01g46000 |
| Deletion | Chr2 | 26572366 | 26572367 | 1 | LOC_Os02g44000 |
| Deletion | Chr3 | 29381989 | 29381990 | 1 | |
| Deletion | Chr2 | 30706712 | 30706713 | 1 | |
| Deletion | Chr1 | 37678031 | 37678034 | 3 | LOC_Os01g64900 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr8 | 2964414 | 2964414 | 1 | |
| Insertion | Chr2 | 8352838 | 8353095 | 258 | |
| Insertion | Chr6 | 16161154 | 16161154 | 1 | |
| Insertion | Chr7 | 5172590 | 5172590 | 1 | |
| Insertion | Chr8 | 6088575 | 6088897 | 323 | |
| Insertion | Chr10 | 22622503 | 22622508 | 6 | |
| Insertion | Chr11 | 18762986 | 18762986 | 1 | LOC_Os11g31920 |
No Inversion
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 9750364 | Chr5 | 5212204 | 2 |
| Translocation | Chr8 | 9803838 | Chr6 | 9802277 | |
| Translocation | Chr11 | 14310365 | Chr7 | 24936783 | 2 |
| Translocation | Chr11 | 14310371 | Chr7 | 24936781 | 2 |
| Translocation | Chr5 | 14745375 | Chr2 | 22741247 | |
| Translocation | Chr12 | 18667591 | Chr7 | 10080107 | |
| Translocation | Chr12 | 22023463 | Chr8 | 27373391 |