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| Mutant Information |
|---|
| Mutant Name | FN3658-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3658-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10195205 | G-T | Homo | ||
| SBS | Chr1 | 15873160 | G-A | Homo | ||
| SBS | Chr1 | 22412975 | T-A | Homo | ||
| SBS | Chr1 | 22412976 | G-T | Homo | ||
| SBS | Chr11 | 11679980 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g20220 |
| SBS | Chr11 | 16107868 | G-A | HET | ||
| SBS | Chr11 | 8035244 | C-T | HET | ||
| SBS | Chr11 | 8445607 | A-T | HET | ||
| SBS | Chr11 | 9086220 | C-T | HET | ||
| SBS | Chr12 | 20902918 | G-A | HET | ||
| SBS | Chr12 | 24328104 | G-A | HET | ||
| SBS | Chr12 | 24952601 | C-T | HET | ||
| SBS | Chr12 | 26434711 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g42570 |
| SBS | Chr12 | 26478859 | C-T | Homo | ||
| SBS | Chr2 | 29767717 | T-A | HET | ||
| SBS | Chr2 | 30611626 | C-T | Homo | ||
| SBS | Chr3 | 11173501 | G-A | Homo | ||
| SBS | Chr3 | 17464244 | C-G | HET | ||
| SBS | Chr3 | 27980818 | C-A | HET | STOP_GAINED | LOC_Os03g49120 |
| SBS | Chr3 | 34956626 | T-C | HET | ||
| SBS | Chr3 | 35448022 | C-T | HET | ||
| SBS | Chr3 | 35654373 | T-A | HET | ||
| SBS | Chr3 | 6435319 | G-A | Homo | ||
| SBS | Chr3 | 6435320 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g12250 |
| SBS | Chr4 | 18102285 | A-T | Homo | ||
| SBS | Chr5 | 10560205 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os05g18340 |
| SBS | Chr5 | 2156990 | A-C | Homo | ||
| SBS | Chr5 | 4054496 | T-A | Homo | ||
| SBS | Chr6 | 26984571 | G-T | Homo | ||
| SBS | Chr7 | 18844695 | C-T | HET | ||
| SBS | Chr7 | 22005925 | T-A | HET | ||
| SBS | Chr7 | 23384157 | C-T | HET | ||
| SBS | Chr7 | 23612108 | G-A | Homo | ||
| SBS | Chr8 | 12527054 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g20885 |
| SBS | Chr8 | 3561721 | C-T | Homo |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 137886 | 137890 | 4 | LOC_Os02g01250 |
| Deletion | Chr6 | 995529 | 995533 | 4 | |
| Deletion | Chr3 | 7182714 | 7182731 | 17 | LOC_Os03g13300 |
| Deletion | Chr1 | 7637150 | 7637151 | 1 | LOC_Os01g13620 |
| Deletion | Chr1 | 7835878 | 7835906 | 28 | |
| Deletion | Chr5 | 15399650 | 15399658 | 8 | |
| Deletion | Chr1 | 20862791 | 20862797 | 6 | |
| Deletion | Chr7 | 21036001 | 21059000 | 22999 | 6 |
| Deletion | Chr7 | 21062001 | 21099000 | 36999 | 7 |
| Deletion | Chr3 | 26764304 | 26764305 | 1 | LOC_Os03g47310 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 9616910 | 9616910 | 1 | |
| Insertion | Chr5 | 9802418 | 9802418 | 1 | |
| Insertion | Chr8 | 6443611 | 6443723 | 113 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 26878314 | 27372568 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 6826921 | Chr9 | 2081447 | |
| Translocation | Chr4 | 16492113 | Chr2 | 5772836 | |
| Translocation | Chr11 | 19199011 | Chr8 | 15172260 | LOC_Os11g32530 |
| Translocation | Chr6 | 22658470 | Chr1 | 299895 | LOC_Os06g38294 |
| Translocation | Chr11 | 23662268 | Chr2 | 17763004 | LOC_Os02g29870 |
| Translocation | Chr8 | 26337509 | Chr1 | 14359791 |