Search Results
| Mutant Information |
|---|
| Mutant Name | FN3666-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3666-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 42
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1767546 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g04070 |
| SBS | Chr1 | 1861193 | T-C | Homo | ||
| SBS | Chr1 | 7523656 | A-T | HET | ||
| SBS | Chr1 | 10414467 | C-T | HET | ||
| SBS | Chr1 | 15925268 | A-G | HET | SPLICE_SITE_DONOR | LOC_Os01g28420 |
| SBS | Chr1 | 25571549 | T-C | HET | ||
| SBS | Chr1 | 31679307 | C-G | HET | ||
| SBS | Chr3 | 8545624 | A-T | HET | ||
| SBS | Chr3 | 8545625 | G-T | HET | ||
| SBS | Chr3 | 10363918 | A-C | HET | ||
| SBS | Chr3 | 13671301 | C-G | HET | ||
| SBS | Chr3 | 17497959 | G-A | HET | ||
| SBS | Chr3 | 22698610 | T-C | HET | ||
| SBS | Chr3 | 31883664 | T-C | HET | ||
| SBS | Chr3 | 35201856 | G-A | HET | ||
| SBS | Chr4 | 12771900 | C-T | Homo | ||
| SBS | Chr4 | 19541898 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g32500 |
| SBS | Chr4 | 27062014 | C-T | HET | ||
| SBS | Chr5 | 5697760 | T-C | Homo | ||
| SBS | Chr5 | 6230853 | T-C | HET | ||
| SBS | Chr5 | 10557892 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g18330 |
| SBS | Chr5 | 10611708 | A-G | Homo | ||
| SBS | Chr6 | 3107657 | A-G | Homo | ||
| SBS | Chr6 | 13987287 | C-T | HET | ||
| SBS | Chr6 | 24831430 | A-T | HET | ||
| SBS | Chr6 | 30150631 | T-A | HET | ||
| SBS | Chr7 | 6111758 | C-T | HET | ||
| SBS | Chr7 | 7211985 | A-G | HET | ||
| SBS | Chr8 | 8597328 | T-C | HET | ||
| SBS | Chr8 | 8667814 | G-C | HET | ||
| SBS | Chr8 | 21047049 | C-G | HET | ||
| SBS | Chr8 | 23272675 | T-C | HET | ||
| SBS | Chr9 | 17932051 | A-G | HET | ||
| SBS | Chr10 | 8216686 | C-A | HET | ||
| SBS | Chr10 | 8216687 | T-G | HET | ||
| SBS | Chr10 | 8552188 | A-T | HET | ||
| SBS | Chr10 | 14056899 | C-T | HET | ||
| SBS | Chr11 | 4422366 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g08390 |
| SBS | Chr11 | 13172985 | C-T | Homo | ||
| SBS | Chr11 | 24419663 | G-T | Homo | ||
| SBS | Chr11 | 24956093 | G-A | HET | ||
| SBS | Chr12 | 1087794 | C-A | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 7337959 | 7337969 | 10 | |
| Deletion | Chr10 | 8253274 | 8253275 | 1 | |
| Deletion | Chr3 | 12768378 | 12768381 | 3 | LOC_Os03g22270 |
| Deletion | Chr3 | 14338411 | 14338414 | 3 | |
| Deletion | Chr7 | 14678303 | 14678311 | 8 | |
| Deletion | Chr8 | 17252788 | 17252790 | 2 | |
| Deletion | Chr11 | 24957029 | 24957036 | 7 | |
| Deletion | Chr4 | 27175909 | 27175917 | 8 | |
| Deletion | Chr1 | 27764489 | 27764496 | 7 | |
| Deletion | Chr5 | 28515001 | 28525000 | 9999 | LOC_Os05g49730 |
| Deletion | Chr2 | 34080145 | 34080146 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 34681039 | 34681039 | 1 | LOC_Os01g59980 |
| Insertion | Chr4 | 2981018 | 2981018 | 1 | LOC_Os04g05800 |
| Insertion | Chr6 | 8170442 | 8170489 | 48 | |
| Insertion | Chr9 | 7327216 | 7327244 | 29 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 13922202 | 13922496 | LOC_Os04g24294 |
| Inversion | Chr4 | 29602934 | 29603206 |
No Translocation