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Mutant Information

Mutant Name	FN3669-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3669-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1330536	C-A	Homo
SBS	Chr1	8748510	C-T	Homo
SBS	Chr2	14150521	G-A	Homo
SBS	Chr2	14151078	T-C	Homo
SBS	Chr3	23123639	G-A	Homo
SBS	Chr4	6544936	G-T	HET
SBS	Chr5	11951294	A-G	Homo
SBS	Chr5	13733862	A-G	Homo
SBS	Chr5	14360425	C-T	Homo
SBS	Chr7	12692102	A-G	Homo
SBS	Chr10	6436536	C-A	HET
SBS	Chr10	6436537	C-T	HET
SBS	Chr10	21650102	A-C	HET
SBS	Chr10	21794593	T-C	HET
SBS	Chr11	11642319	G-A	HET	STOP_GAINED	LOC_Os11g20150
SBS	Chr12	14954158	G-T	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	2530338	2530350	12
Deletion	Chr5	11896260	11896262	2
Deletion	Chr7	12174944	12174945	1
Deletion	Chr11	12317372	12317373	1
Deletion	Chr3	13499433	13499508	75
Deletion	Chr3	17135542	17135543	1	LOC_Os03g30030
Deletion	Chr3	20932575	20932582	7	LOC_Os03g37750
Deletion	Chr1	24451796	24451799	3
Deletion	Chr1	25834649	25834650	1
Deletion	Chr6	26461001	26862000	400999	57
Deletion	Chr6	26871001	26914000	42999	7
Deletion	Chr6	26926001	27053000	126999	19
Deletion	Chr1	30567577	30567579	2
Deletion	Chr1	34946001	34978000	31999	7

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	14151056	14151056	1
Insertion	Chr1	34123379	34123379	1
Insertion	Chr7	17320556	17320556	1	LOC_Os07g29500
Insertion	Chr8	5515672	5515672	1
Insertion	Chr9	15529192	15529193	2
Insertion	Chr11	9977048	9977048	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	15183093	16045385
Inversion	Chr8	15195663	16049177	LOC_Os08g26310
Inversion	Chr6	20129993	20461350
Inversion	Chr6	20129996	20466166
Inversion	Chr1	33586935	33587097

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	7547690	Chr1	2551178	2
Translocation	Chr7	9604616	Chr3	25732270
Translocation	Chr7	9791758	Chr3	25732248	LOC_Os07g16690
Translocation	Chr10	13240521	Chr9	19003395	LOC_Os09g31498
Translocation	Chr10	13240580	Chr9	19003705	LOC_Os09g31498
Translocation	Chr8	13852224	Chr2	16736672	LOC_Os02g28320
Translocation	Chr8	16332271	Chr2	10454963	LOC_Os08g26850
Translocation	Chr11	18279665	Chr3	29622495
Translocation	Chr12	18301853	Chr9	21567476	LOC_Os12g30490
Translocation	Chr12	18501956	Chr8	11862946
Translocation	Chr12	19090964	Chr10	1076410	LOC_Os12g31710
Translocation	Chr12	20935701	Chr2	10798033
Translocation	Chr11	22948213	Chr10	17172289
Translocation	Chr12	27006089	Chr2	10461208