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| Mutant Information |
|---|
| Mutant Name | FN3670-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3670-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11530566 | A-G | Homo | ||
| SBS | Chr1 | 39074893 | G-A | HET | ||
| SBS | Chr1 | 5073163 | T-C | Homo | ||
| SBS | Chr1 | 6948760 | A-G | HET | ||
| SBS | Chr10 | 12284961 | A-G | Homo | ||
| SBS | Chr11 | 8781431 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g15500 |
| SBS | Chr12 | 13615860 | G-T | HET | ||
| SBS | Chr12 | 24490987 | T-C | HET | ||
| SBS | Chr12 | 947664 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g02710 |
| SBS | Chr2 | 17672441 | G-T | HET | ||
| SBS | Chr2 | 18226529 | A-T | HET | ||
| SBS | Chr2 | 24176680 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g39980 |
| SBS | Chr3 | 15623790 | T-G | HET | ||
| SBS | Chr3 | 16012321 | T-C | HET | ||
| SBS | Chr3 | 19010029 | G-A | HET | ||
| SBS | Chr5 | 10987260 | C-T | HET | ||
| SBS | Chr5 | 6554915 | T-C | Homo | ||
| SBS | Chr5 | 9212103 | A-T | Homo | STOP_GAINED | LOC_Os05g16270 |
| SBS | Chr6 | 13803560 | T-C | HET | ||
| SBS | Chr6 | 23946875 | G-C | HET | ||
| SBS | Chr6 | 28894787 | G-C | HET | ||
| SBS | Chr6 | 3324890 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g07010 |
| SBS | Chr6 | 5823038 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g11110 |
| SBS | Chr7 | 15730642 | T-C | HET | ||
| SBS | Chr8 | 15489747 | C-T | HET | ||
| SBS | Chr8 | 24786707 | G-A | HET | ||
| SBS | Chr9 | 18597641 | C-T | HET |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 1827771 | 1827772 | 1 | LOC_Os12g04310 |
| Deletion | Chr4 | 3074877 | 3074878 | 1 | |
| Deletion | Chr2 | 3271561 | 3271574 | 13 | |
| Deletion | Chr6 | 6662843 | 6662847 | 4 | |
| Deletion | Chr5 | 7706090 | 7706095 | 5 | LOC_Os05g13860 |
| Deletion | Chr11 | 14937244 | 14937246 | 2 | |
| Deletion | Chr7 | 18548795 | 18548802 | 7 | |
| Deletion | Chr3 | 19040659 | 19040660 | 1 | |
| Deletion | Chr12 | 19761312 | 19761319 | 7 | |
| Deletion | Chr9 | 22108661 | 22108662 | 1 | |
| Deletion | Chr10 | 22715383 | 22715384 | 1 | LOC_Os10g42202 |
| Deletion | Chr2 | 32295022 | 32295024 | 2 | |
| Deletion | Chr2 | 32500514 | 32500520 | 6 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 8811236 | 8811409 | 174 | LOC_Os06g15540 |
| Insertion | Chr9 | 14705826 | 14705827 | 2 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 17779355 | 17779741 | LOC_Os10g33710 |
| Inversion | Chr4 | 18377272 | 18615675 | |
| Inversion | Chr4 | 18377281 | 18615697 | |
| Inversion | Chr4 | 23979385 | 23979619 | LOC_Os04g40330 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 11388012 | Chr7 | 1638446 | LOC_Os07g03910 |
| Translocation | Chr12 | 13374703 | Chr4 | 32892375 | |
| Translocation | Chr11 | 27838136 | Chr1 | 33304360 | LOC_Os01g57599 |