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| Mutant Information |
|---|
| Mutant Name | FN3674-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3674-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13109470 | G-A | HET | ||
| SBS | Chr1 | 16614718 | C-T | HET | ||
| SBS | Chr10 | 16751563 | C-A | HET | ||
| SBS | Chr10 | 22599412 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g42030 |
| SBS | Chr10 | 6718256 | G-T | HET | ||
| SBS | Chr11 | 25152958 | T-C | Homo | ||
| SBS | Chr12 | 4639675 | A-G | HET | ||
| SBS | Chr2 | 3156526 | C-T | HET | ||
| SBS | Chr3 | 23065654 | A-C | HET | ||
| SBS | Chr3 | 4597958 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g08870 |
| SBS | Chr3 | 8313900 | C-T | HET | ||
| SBS | Chr4 | 17027153 | A-T | HET | ||
| SBS | Chr4 | 23495439 | G-A | HET | ||
| SBS | Chr4 | 23729115 | C-G | HET | ||
| SBS | Chr4 | 32523044 | C-T | HET | ||
| SBS | Chr4 | 4564020 | A-G | HET | ||
| SBS | Chr4 | 5589546 | G-A | HET | ||
| SBS | Chr4 | 7399171 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g13310 |
| SBS | Chr5 | 14347345 | A-G | HET | ||
| SBS | Chr5 | 6203507 | A-T | Homo | ||
| SBS | Chr5 | 9903366 | A-T | HET | ||
| SBS | Chr6 | 21094192 | G-A | Homo | ||
| SBS | Chr6 | 9284137 | C-G | HET | ||
| SBS | Chr7 | 11387086 | T-C | Homo | ||
| SBS | Chr7 | 5686849 | C-T | Homo | ||
| SBS | Chr9 | 3569684 | G-A | Homo |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 2446768 | 2446773 | 5 | |
| Deletion | Chr4 | 9079166 | 9079169 | 3 | |
| Deletion | Chr7 | 9380475 | 9380476 | 1 | |
| Deletion | Chr5 | 10402013 | 10402022 | 9 | |
| Deletion | Chr11 | 11182667 | 11182677 | 10 | LOC_Os11g19440 |
| Deletion | Chr11 | 12605001 | 12626000 | 20999 | 3 |
| Deletion | Chr5 | 13885023 | 13885025 | 2 | |
| Deletion | Chr10 | 15017321 | 15017328 | 7 | |
| Deletion | Chr8 | 17464001 | 17476000 | 11999 | LOC_Os08g28600 |
| Deletion | Chr8 | 17485001 | 17854000 | 368999 | 53 |
| Deletion | Chr6 | 18089782 | 18089783 | 1 | |
| Deletion | Chr3 | 23017001 | 23049000 | 31999 | 4 |
| Deletion | Chr6 | 23792360 | 23792372 | 12 | LOC_Os06g40000 |
| Deletion | Chr6 | 24421039 | 24421049 | 10 | |
| Deletion | Chr11 | 24866218 | 24866220 | 2 | |
| Deletion | Chr2 | 31730510 | 31730511 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 14131850 | 14131851 | 2 | |
| Insertion | Chr5 | 11898000 | 11898003 | 4 | |
| Insertion | Chr5 | 3381127 | 3381128 | 2 | |
| Insertion | Chr7 | 22054665 | 22054668 | 4 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 14255406 | 14694504 | |
| Inversion | Chr7 | 26565498 | 26565605 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 1197 | Chr7 | 1263 | |
| Translocation | Chr11 | 6190465 | Chr9 | 1170742 | LOC_Os11g11180 |
| Translocation | Chr8 | 7455821 | Chr2 | 16612646 | |
| Translocation | Chr6 | 9640169 | Chr4 | 12945199 | LOC_Os06g16710 |
| Translocation | Chr8 | 17661176 | Chr4 | 11303321 | |
| Translocation | Chr11 | 26002459 | Chr6 | 20608561 |