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| Mutant Information |
|---|
| Mutant Name | FN3675-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3675-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 38
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15427833 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g27660 |
| SBS | Chr1 | 1926552 | C-A | Homo | ||
| SBS | Chr1 | 28330250 | G-A | Homo | ||
| SBS | Chr1 | 29368953 | C-A | Homo | ||
| SBS | Chr10 | 3580396 | T-C | HET | ||
| SBS | Chr10 | 6993133 | C-T | HET | ||
| SBS | Chr11 | 19309643 | A-T | HET | ||
| SBS | Chr11 | 21985351 | T-A | HET | ||
| SBS | Chr11 | 2600977 | G-T | HET | ||
| SBS | Chr11 | 29002681 | C-T | Homo | ||
| SBS | Chr12 | 22227870 | G-A | Homo | ||
| SBS | Chr12 | 9533630 | C-T | HET | ||
| SBS | Chr2 | 12348673 | C-T | HET | ||
| SBS | Chr2 | 18231485 | G-A | Homo | ||
| SBS | Chr2 | 19855132 | G-A | Homo | ||
| SBS | Chr2 | 29949909 | A-G | Homo | ||
| SBS | Chr2 | 32518823 | A-G | Homo | ||
| SBS | Chr2 | 33550618 | C-T | HET | ||
| SBS | Chr2 | 4867963 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g09480 |
| SBS | Chr2 | 6947127 | A-G | Homo | ||
| SBS | Chr2 | 9188620 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g16150 |
| SBS | Chr3 | 13501317 | C-T | HET | ||
| SBS | Chr3 | 14702901 | C-T | HET | ||
| SBS | Chr3 | 4380315 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g08520 |
| SBS | Chr5 | 4059164 | G-T | HET | ||
| SBS | Chr5 | 7532769 | A-T | HET | ||
| SBS | Chr6 | 6407886 | C-T | Homo | ||
| SBS | Chr7 | 23738635 | C-T | HET | ||
| SBS | Chr7 | 24205960 | C-T | HET | ||
| SBS | Chr8 | 15951081 | G-T | HET | ||
| SBS | Chr8 | 21069710 | C-T | HET | ||
| SBS | Chr8 | 21450475 | A-G | Homo | ||
| SBS | Chr8 | 4302572 | A-G | HET | ||
| SBS | Chr8 | 4906671 | G-A | HET | ||
| SBS | Chr9 | 16331590 | C-A | HET | ||
| SBS | Chr9 | 1685101 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g03410 |
| SBS | Chr9 | 4299000 | C-T | HET | ||
| SBS | Chr9 | 6972538 | A-G | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 26698 | 26700 | 2 | |
| Deletion | Chr8 | 1387007 | 1387009 | 2 | |
| Deletion | Chr4 | 2215589 | 2215592 | 3 | |
| Deletion | Chr12 | 6635666 | 6635668 | 2 | |
| Deletion | Chr8 | 8548001 | 8577000 | 28999 | 6 |
| Deletion | Chr5 | 10686298 | 10686299 | 1 | |
| Deletion | Chr5 | 14625803 | 14625805 | 2 | |
| Deletion | Chr12 | 17891911 | 17891917 | 6 | |
| Deletion | Chr3 | 19884169 | 19884172 | 3 | |
| Deletion | Chr7 | 25848387 | 25848390 | 3 | LOC_Os07g43140 |
| Deletion | Chr6 | 25970351 | 25970354 | 3 | LOC_Os06g43210 |
| Deletion | Chr4 | 28187173 | 28187185 | 12 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 21726610 | 21726612 | 3 | |
| Insertion | Chr3 | 24372293 | 24372294 | 2 | LOC_Os03g43610 |
| Insertion | Chr7 | 17891197 | 17891198 | 2 | |
| Insertion | Chr7 | 17968407 | 17968407 | 1 | LOC_Os07g30360 |
| Insertion | Chr8 | 22128873 | 22128873 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 7794676 | 8027185 | LOC_Os10g15250 |
| Inversion | Chr3 | 23977291 | 24597894 | LOC_Os03g43860 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 17328495 | Chr2 | 34491497 |