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| Mutant Information |
|---|
| Mutant Name | FN3676-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3676-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 39
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13291033 | G-T | HET | ||
| SBS | Chr1 | 18426422 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g33460 |
| SBS | Chr1 | 29023907 | C-T | Homo | ||
| SBS | Chr1 | 37062784 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g63870 |
| SBS | Chr1 | 4021388 | A-G | HET | ||
| SBS | Chr1 | 4242481 | T-C | HET | ||
| SBS | Chr10 | 6803017 | T-C | HET | ||
| SBS | Chr10 | 7988683 | T-C | HET | ||
| SBS | Chr11 | 18758366 | G-A | HET | ||
| SBS | Chr11 | 27408331 | T-C | HET | ||
| SBS | Chr11 | 585686 | G-T | Homo | ||
| SBS | Chr11 | 7552993 | A-G | Homo | ||
| SBS | Chr12 | 1026386 | A-G | HET | ||
| SBS | Chr12 | 11111189 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g19140 |
| SBS | Chr12 | 17098207 | G-A | HET | ||
| SBS | Chr12 | 27322712 | A-G | HET | ||
| SBS | Chr2 | 10122854 | G-T | HET | ||
| SBS | Chr2 | 10199168 | A-G | HET | ||
| SBS | Chr2 | 1945392 | C-T | HET | ||
| SBS | Chr2 | 2196359 | G-A | HET | ||
| SBS | Chr3 | 24707849 | G-T | Homo | ||
| SBS | Chr3 | 2780561 | G-A | HET | ||
| SBS | Chr3 | 32249801 | G-C | Homo | ||
| SBS | Chr3 | 35282163 | A-T | HET | ||
| SBS | Chr3 | 5248693 | G-A | HET | STOP_GAINED | LOC_Os03g10290 |
| SBS | Chr3 | 9053583 | C-A | HET | ||
| SBS | Chr4 | 10218549 | G-A | Homo | ||
| SBS | Chr4 | 12045724 | C-T | Homo | ||
| SBS | Chr4 | 22273012 | C-T | Homo | ||
| SBS | Chr5 | 13570836 | A-C | HET | ||
| SBS | Chr5 | 18509955 | G-A | HET | ||
| SBS | Chr6 | 15324241 | G-A | Homo | ||
| SBS | Chr6 | 4753942 | T-C | HET | ||
| SBS | Chr7 | 5942608 | A-G | HET | ||
| SBS | Chr8 | 11780190 | T-A | Homo | ||
| SBS | Chr9 | 16753975 | C-G | HET | ||
| SBS | Chr9 | 21782639 | A-G | HET | ||
| SBS | Chr9 | 22201270 | C-T | HET | ||
| SBS | Chr9 | 3195376 | G-A | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 3532001 | 3617000 | 84999 | 11 |
| Deletion | Chr12 | 4728671 | 4728674 | 3 | |
| Deletion | Chr3 | 5934819 | 5934826 | 7 | |
| Deletion | Chr9 | 6196819 | 6196820 | 1 | |
| Deletion | Chr3 | 6318602 | 6318603 | 1 | |
| Deletion | Chr5 | 9658740 | 9658746 | 6 | |
| Deletion | Chr2 | 9891001 | 9902000 | 10999 | 3 |
| Deletion | Chr1 | 19501049 | 19501051 | 2 | LOC_Os01g35220 |
| Deletion | Chr8 | 22399956 | 22399958 | 2 | |
| Deletion | Chr1 | 26164166 | 26164175 | 9 | |
| Deletion | Chr4 | 28278665 | 28278880 | 215 | LOC_Os04g47650 |
Insertions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 33083050 | 33083547 | 498 | LOC_Os01g5 |
| Insertion | Chr4 | 10915131 | 10915131 | 1 | LOC_Os04g19590 |
| Insertion | Chr4 | 18043888 | 18043889 | 2 | LOC_Os04g30240 |
| Insertion | Chr4 | 29150317 | 29150320 | 4 | |
| Insertion | Chr4 | 7914316 | 7914319 | 4 | |
| Insertion | Chr5 | 7260800 | 7260801 | 2 | |
| Insertion | Chr7 | 548233 | 548234 | 2 | |
| Insertion | Chr9 | 12030074 | 12030074 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 6570657 | 6795750 | |
| Inversion | Chr12 | 6570662 | 6795752 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 141348 | Chr1 | 17013750 | LOC_Os01g31110 |
| Translocation | Chr10 | 141353 | Chr1 | 17063327 | |
| Translocation | Chr5 | 13683790 | Chr4 | 14441797 | 2 |
| Translocation | Chr8 | 19335351 | Chr4 | 12548138 |