Search Results
Mutant Information |
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Mutant Name | FN3678-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3678-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 42
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 2682992 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g05620 |
SBS | Chr1 | 30652650 | G-T | HET | ||
SBS | Chr1 | 34611762 | C-T | HET | ||
SBS | Chr1 | 37082122 | C-T | HET | ||
SBS | Chr1 | 41873186 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g72210 |
SBS | Chr2 | 4579282 | C-T | HET | ||
SBS | Chr2 | 6214711 | A-T | HET | ||
SBS | Chr2 | 10430473 | C-T | HET | ||
SBS | Chr2 | 17445380 | T-C | HET | ||
SBS | Chr2 | 20482596 | T-A | HET | ||
SBS | Chr2 | 22136724 | T-A | HET | ||
SBS | Chr2 | 26975605 | G-A | Homo | ||
SBS | Chr2 | 27912912 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g45830 |
SBS | Chr3 | 5676892 | C-T | HET | ||
SBS | Chr3 | 10023533 | C-T | HET | ||
SBS | Chr3 | 11241416 | C-T | HET | ||
SBS | Chr3 | 11256433 | A-T | HET | ||
SBS | Chr3 | 36271764 | G-A | HET | ||
SBS | Chr4 | 18627872 | G-T | HET | ||
SBS | Chr4 | 18754843 | C-A | HET | ||
SBS | Chr4 | 21242732 | C-T | HET | ||
SBS | Chr4 | 21626371 | T-A | HET | ||
SBS | Chr4 | 25188162 | C-T | HET | ||
SBS | Chr4 | 29787407 | G-A | HET | ||
SBS | Chr5 | 4060979 | C-T | HET | ||
SBS | Chr5 | 17657924 | C-A | HET | ||
SBS | Chr5 | 18405585 | G-A | HET | ||
SBS | Chr5 | 21708580 | A-G | HET | ||
SBS | Chr6 | 29112019 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g48110 |
SBS | Chr7 | 1529999 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g03740 |
SBS | Chr7 | 10495664 | C-T | HET | ||
SBS | Chr7 | 28768236 | A-G | HET | ||
SBS | Chr8 | 22118647 | G-A | Homo | ||
SBS | Chr8 | 22151877 | T-A | HET | ||
SBS | Chr9 | 1859636 | T-A | HET | ||
SBS | Chr9 | 5498540 | C-T | HET | ||
SBS | Chr9 | 18028171 | C-T | HET | ||
SBS | Chr10 | 503114 | A-C | HET | ||
SBS | Chr10 | 3698276 | C-T | HET | ||
SBS | Chr11 | 9204038 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g16600 |
SBS | Chr11 | 16312374 | C-T | HET | ||
SBS | Chr11 | 17298152 | G-A | HET |
Deletions: 9
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr10 | 1561436 | 1561442 | 6 | LOC_Os10g03610 |
Deletion | Chr5 | 1840743 | 1840748 | 5 | LOC_Os05g04090 |
Deletion | Chr7 | 7126539 | 7126545 | 6 | |
Deletion | Chr12 | 9429815 | 9429836 | 21 | |
Deletion | Chr8 | 10090283 | 10090291 | 8 | |
Deletion | Chr4 | 16332456 | 16332462 | 6 | |
Deletion | Chr6 | 26551921 | 26551923 | 2 | |
Deletion | Chr2 | 33522078 | 33522079 | 1 | |
Deletion | Chr2 | 34705364 | 34705366 | 2 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr10 | 11108949 | 11108950 | 2 | |
Insertion | Chr11 | 11558331 | 11558332 | 2 | |
Insertion | Chr12 | 9708350 | 9708351 | 2 | |
Insertion | Chr5 | 12775513 | 12775513 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr10 | 3095200 | 3112920 | 2 |
Inversion | Chr10 | 3112909 | 3228514 | 2 |
Translocations: 5
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 7765420 | Chr1 | 1946548 | |
Translocation | Chr11 | 8942972 | Chr3 | 17955938 | LOC_Os11g16250 |
Translocation | Chr11 | 10775753 | Chr1 | 28240039 | |
Translocation | Chr11 | 10775756 | Chr1 | 28241036 | |
Translocation | Chr6 | 26890271 | Chr2 | 21623471 |