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Mutant Information |
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Mutant Name | FN3681-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3681-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 36
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 13603370 | T-C | HET | ||
SBS | Chr1 | 18088788 | C-A | HET | ||
SBS | Chr1 | 39756700 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g68410 |
SBS | Chr1 | 42814949 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g73880 |
SBS | Chr10 | 18881719 | A-T | HET | ||
SBS | Chr10 | 19999887 | T-A | HET | ||
SBS | Chr11 | 16492183 | A-G | HET | ||
SBS | Chr11 | 17797888 | T-C | HET | ||
SBS | Chr11 | 1879074 | C-T | HET | ||
SBS | Chr11 | 26080385 | T-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g43230 |
SBS | Chr11 | 26934187 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g44550 |
SBS | Chr12 | 22202110 | G-A | HET | ||
SBS | Chr2 | 14610977 | G-A | HET | ||
SBS | Chr2 | 18550124 | A-G | HET | ||
SBS | Chr2 | 19920090 | C-T | HET | ||
SBS | Chr2 | 21906714 | C-A | Homo | ||
SBS | Chr2 | 34312559 | C-T | Homo | ||
SBS | Chr2 | 9877962 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g17230 |
SBS | Chr4 | 31582434 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g53030 |
SBS | Chr4 | 33302013 | C-T | HET | ||
SBS | Chr5 | 29895659 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g52070 |
SBS | Chr5 | 3485984 | C-T | HET | ||
SBS | Chr5 | 5848463 | C-T | HET | ||
SBS | Chr6 | 1840253 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g04330 |
SBS | Chr6 | 27739214 | C-G | HET | ||
SBS | Chr6 | 28329335 | A-G | HET | ||
SBS | Chr6 | 31105480 | G-A | HET | ||
SBS | Chr6 | 507939 | G-A | HET | ||
SBS | Chr7 | 13014997 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g23070 |
SBS | Chr7 | 13014998 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g23070 |
SBS | Chr7 | 17965737 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g30360 |
SBS | Chr7 | 22811120 | A-G | HET | ||
SBS | Chr7 | 9564165 | T-A | HET | ||
SBS | Chr9 | 16289616 | T-A | Homo | ||
SBS | Chr9 | 2912435 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g06220 |
SBS | Chr9 | 821754 | T-A | HET |
Deletions: 15
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 1700672 | 1700674 | 2 | |
Deletion | Chr11 | 4090559 | 4090560 | 1 | |
Deletion | Chr5 | 4337007 | 4337010 | 3 | LOC_Os05g08020 |
Deletion | Chr7 | 6533955 | 6533958 | 3 | |
Deletion | Chr8 | 10466805 | 10466820 | 15 | |
Deletion | Chr11 | 11380109 | 11380110 | 1 | |
Deletion | Chr10 | 13914212 | 13914220 | 8 | LOC_Os10g26650 |
Deletion | Chr12 | 17996187 | 17996188 | 1 | LOC_Os12g30050 |
Deletion | Chr8 | 18661626 | 18661633 | 7 | LOC_Os08g30320 |
Deletion | Chr5 | 20357940 | 20357941 | 1 | |
Deletion | Chr9 | 21066235 | 21066240 | 5 | |
Deletion | Chr2 | 24672796 | 24672810 | 14 | |
Deletion | Chr6 | 28843157 | 28843158 | 1 | |
Deletion | Chr2 | 31878061 | 31878063 | 2 | LOC_Os02g52090 |
Deletion | Chr2 | 33605156 | 33605168 | 12 | LOC_Os02g54870 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr12 | 21777752 | 21777752 | 1 | LOC_Os12g35760![]() |
Insertion | Chr3 | 3054013 | 3054013 | 1 | LOC_Os03g06100![]() |
Insertion | Chr4 | 1904991 | 1904992 | 2 | |
Insertion | Chr7 | 21097155 | 21097157 | 3 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr1 | 22216746 | 22217032 | |
Inversion | Chr3 | 34491949 | 34551768 | LOC_Os03g60670 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 16783131 | Chr5 | 13970147 | LOC_Os05g24190 |
Translocation | Chr11 | 18955140 | Chr10 | 1051677 | |
Translocation | Chr11 | 27843668 | Chr6 | 22525982 | 2 |