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Mutant Information

Mutant NameFN3681-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3681-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 36
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr113603370T-CHET
SBSChr118088788C-AHET
SBSChr139756700T-AHETNON_SYNONYMOUS_CODINGLOC_Os01g68410
SBSChr142814949A-THETNON_SYNONYMOUS_CODINGLOC_Os01g73880
SBSChr1018881719A-THET
SBSChr1019999887T-AHET
SBSChr1116492183A-GHET
SBSChr1117797888T-CHET
SBSChr111879074C-THET
SBSChr1126080385T-GHomoNON_SYNONYMOUS_CODINGLOC_Os11g43230
SBSChr1126934187G-AHomoNON_SYNONYMOUS_CODINGLOC_Os11g44550
SBSChr1222202110G-AHET
SBSChr214610977G-AHET
SBSChr218550124A-GHET
SBSChr219920090C-THET
SBSChr221906714C-AHomo
SBSChr234312559C-THomo
SBSChr29877962G-AHETNON_SYNONYMOUS_CODINGLOC_Os02g17230
SBSChr431582434T-GHETNON_SYNONYMOUS_CODINGLOC_Os04g53030
SBSChr433302013C-THET
SBSChr529895659A-THETNON_SYNONYMOUS_CODINGLOC_Os05g52070
SBSChr53485984C-THET
SBSChr55848463C-THET
SBSChr61840253A-GHETNON_SYNONYMOUS_CODINGLOC_Os06g04330
SBSChr627739214C-GHET
SBSChr628329335A-GHET
SBSChr631105480G-AHET
SBSChr6507939G-AHET
SBSChr713014997A-THETNON_SYNONYMOUS_CODINGLOC_Os07g23070
SBSChr713014998C-THETNON_SYNONYMOUS_CODINGLOC_Os07g23070
SBSChr717965737A-THETNON_SYNONYMOUS_CODINGLOC_Os07g30360
SBSChr722811120A-GHET
SBSChr79564165T-AHET
SBSChr916289616T-AHomo
SBSChr92912435A-CHETNON_SYNONYMOUS_CODINGLOC_Os09g06220
SBSChr9821754T-AHET

Deletions: 15
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr4170067217006742
DeletionChr11409055940905601
DeletionChr5433700743370103LOC_Os05g08020
DeletionChr7653395565339583
DeletionChr8104668051046682015
DeletionChr1111380109113801101
DeletionChr1013914212139142208LOC_Os10g26650
DeletionChr1217996187179961881LOC_Os12g30050
DeletionChr818661626186616337LOC_Os08g30320
DeletionChr520357940203579411
DeletionChr921066235210662405
DeletionChr2246727962467281014
DeletionChr628843157288431581
DeletionChr231878061318780632LOC_Os02g52090
DeletionChr2336051563360516812LOC_Os02g54870

Insertions: 4
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1221777752217777521LOC_Os12g35760image
InsertionChr3305401330540131LOC_Os03g06100image
InsertionChr4190499119049922
InsertionChr721097155210971573

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr12221674622217032
InversionChr33449194934551768LOC_Os03g60670

Translocations: 3
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr816783131Chr513970147LOC_Os05g24190
TranslocationChr1118955140Chr101051677
TranslocationChr1127843668Chr6225259822