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| Mutant Information |
|---|
| Mutant Name | FN3690-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3690-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 26613351 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g46720 |
| SBS | Chr10 | 10655951 | T-A | Homo | ||
| SBS | Chr10 | 20519687 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g38402 |
| SBS | Chr10 | 3980857 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g07480 |
| SBS | Chr11 | 16013797 | C-T | HET | ||
| SBS | Chr2 | 13941718 | T-G | Homo | ||
| SBS | Chr3 | 29506790 | A-G | Homo | ||
| SBS | Chr3 | 32978081 | A-T | Homo | ||
| SBS | Chr4 | 10614141 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g19114 |
| SBS | Chr4 | 20462121 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g33780 |
| SBS | Chr6 | 215359 | A-G | Homo | ||
| SBS | Chr7 | 26873354 | C-T | HET | ||
| SBS | Chr7 | 29080949 | G-A | HET | ||
| SBS | Chr7 | 29080951 | G-C | HET | ||
| SBS | Chr7 | 3367823 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g06890 |
| SBS | Chr8 | 720585 | C-A | HET | ||
| SBS | Chr9 | 12460314 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g20684 |
| SBS | Chr9 | 13172077 | C-T | HET | ||
| SBS | Chr9 | 18143352 | C-A | HET | ||
| SBS | Chr9 | 4158519 | G-A | HET | ||
| SBS | Chr9 | 687490 | A-T | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1382813 | 1382814 | 1 | LOC_Os09g02950 |
| Deletion | Chr3 | 1479824 | 1479825 | 1 | |
| Deletion | Chr8 | 2560912 | 2560913 | 1 | LOC_Os08g04990 |
| Deletion | Chr2 | 2711735 | 2711736 | 1 | |
| Deletion | Chr9 | 2806869 | 2806870 | 1 | |
| Deletion | Chr4 | 4506823 | 4506835 | 12 | |
| Deletion | Chr12 | 4856830 | 4856844 | 14 | |
| Deletion | Chr4 | 6757167 | 6757170 | 3 | |
| Deletion | Chr5 | 6970928 | 6970929 | 1 | |
| Deletion | Chr6 | 11856666 | 11856667 | 1 | LOC_Os06g20600 |
| Deletion | Chr10 | 12341277 | 12341278 | 1 | |
| Deletion | Chr10 | 19183001 | 19290000 | 106999 | 16 |
| Deletion | Chr3 | 26807084 | 26807089 | 5 | |
| Deletion | Chr3 | 32032618 | 32032634 | 16 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 21689157 | 21689166 | 10 | |
| Insertion | Chr12 | 19065908 | 19065908 | 1 | |
| Insertion | Chr5 | 13988934 | 13988934 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 6262433 | 6586884 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 8561243 | Chr1 | 14847320 | LOC_Os08g14290 |
| Translocation | Chr7 | 10511348 | Chr6 | 11334670 | |
| Translocation | Chr12 | 11274427 | Chr7 | 8261484 | LOC_Os12g19381 |
| Translocation | Chr10 | 11512915 | Chr9 | 759195 | LOC_Os09g02070 |
| Translocation | Chr11 | 13392862 | Chr8 | 11929600 | 2 |
| Translocation | Chr12 | 22237329 | Chr1 | 13535654 | |
| Translocation | Chr12 | 22721789 | Chr10 | 6570962 | |
| Translocation | Chr6 | 23652626 | Chr1 | 26128606 | |
| Translocation | Chr8 | 23996026 | Chr7 | 4494543 | 2 |