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| Mutant Information |
|---|
| Mutant Name | FN3692-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3692-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 18357061 | G-C | HET | ||
| SBS | Chr10 | 19533920 | T-C | HET | ||
| SBS | Chr10 | 22743027 | G-A | HET | ||
| SBS | Chr10 | 22743028 | C-G | HET | ||
| SBS | Chr11 | 11664061 | C-G | HET | ||
| SBS | Chr12 | 14220122 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g24790 |
| SBS | Chr12 | 2317394 | C-A | HET | STOP_GAINED | LOC_Os12g05220 |
| SBS | Chr12 | 26818714 | C-T | HET | ||
| SBS | Chr12 | 8886912 | G-T | HET | ||
| SBS | Chr2 | 30253441 | G-C | HET | ||
| SBS | Chr2 | 46527 | T-C | HET | ||
| SBS | Chr2 | 5107204 | T-C | HET | ||
| SBS | Chr3 | 4871870 | C-T | HET | ||
| SBS | Chr4 | 10915869 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g19590 |
| SBS | Chr4 | 9762681 | A-G | HET | ||
| SBS | Chr5 | 14549571 | C-T | HET | ||
| SBS | Chr5 | 15426716 | G-C | HET | ||
| SBS | Chr5 | 23674083 | T-C | HET | ||
| SBS | Chr5 | 23948490 | G-T | HET | ||
| SBS | Chr6 | 10390760 | T-C | Homo | ||
| SBS | Chr6 | 15681782 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g27690 |
| SBS | Chr6 | 17027946 | C-T | HET | ||
| SBS | Chr6 | 2321477 | C-G | HET | ||
| SBS | Chr6 | 26794037 | C-G | HET | ||
| SBS | Chr8 | 24364422 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g38510 |
| SBS | Chr8 | 2533053 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g04950 |
| SBS | Chr8 | 9728918 | A-G | Homo | ||
| SBS | Chr9 | 16315384 | T-G | HET | ||
| SBS | Chr9 | 18578102 | C-T | HET |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 3106717 | 3106721 | 4 | |
| Deletion | Chr7 | 4850532 | 4850536 | 4 | LOC_Os07g09250 |
| Deletion | Chr2 | 5097571 | 5097573 | 2 | |
| Deletion | Chr11 | 5504001 | 5520000 | 15999 | 3 |
| Deletion | Chr4 | 12686839 | 12686840 | 1 | |
| Deletion | Chr9 | 14638529 | 14638532 | 3 | |
| Deletion | Chr2 | 30239470 | 30239474 | 4 | |
| Deletion | Chr2 | 31179290 | 31179298 | 8 | LOC_Os02g50970 |
| Deletion | Chr2 | 31389795 | 31389796 | 1 |
Insertions: 5
Inversions: 7
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 9216399 | 9270532 | LOC_Os09g15180 |
| Inversion | Chr9 | 9216408 | 9270536 | LOC_Os09g15180 |
| Inversion | Chr9 | 18374306 | 18434638 | LOC_Os09g30270 |
| Inversion | Chr5 | 20535490 | 21008940 | LOC_Os05g35380 |
| Inversion | Chr5 | 20535513 | 21008946 | LOC_Os05g35380 |
| Inversion | Chr6 | 28565813 | 28579375 | |
| Inversion | Chr6 | 28565821 | 28579414 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 6002713 | Chr4 | 32327160 | LOC_Os07g10950 |
| Translocation | Chr10 | 8050516 | Chr8 | 18696402 | LOC_Os10g15210 |
| Translocation | Chr12 | 9802432 | Chr1 | 530979 | |
| Translocation | Chr10 | 10944274 | Chr6 | 10285825 | 2 |
| Translocation | Chr11 | 11831971 | Chr7 | 14037580 | LOC_Os07g24670 |
| Translocation | Chr8 | 16707202 | Chr4 | 1747530 | LOC_Os08g27360 |
| Translocation | Chr4 | 17832097 | Chr2 | 12837100 | |
| Translocation | Chr12 | 27115599 | Chr3 | 17206796 | |
| Translocation | Chr3 | 31652160 | Chr1 | 22965030 | |
| Translocation | Chr4 | 32065675 | Chr3 | 35082623 | LOC_Os04g53810 |
| Translocation | Chr3 | 35138204 | Chr2 | 4117541 | LOC_Os03g62000 |