Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24557905	A-G	HET
SBS	Chr10	788730	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g02240
SBS	Chr11	242094	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g01380
SBS	Chr11	242097	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g01380
SBS	Chr11	24874215	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g41470
SBS	Chr11	28668954	C-A	HET
SBS	Chr12	373672	G-A	Homo
SBS	Chr2	10292285	C-T	HET
SBS	Chr2	17326455	C-A	HET
SBS	Chr2	28281895	C-T	HET
SBS	Chr2	28900680	A-T	HET
SBS	Chr2	7131020	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g13360
SBS	Chr2	9330647	G-T	HET
SBS	Chr3	11557655	C-A	Homo
SBS	Chr3	14085980	A-G	Homo
SBS	Chr3	18816770	G-A	HET
SBS	Chr3	3824206	G-A	HET
SBS	Chr3	8825306	C-T	HET
SBS	Chr4	13073085	G-C	HET
SBS	Chr4	13529240	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g23630
SBS	Chr4	19865250	G-A	Homo
SBS	Chr4	27679421	C-A	Homo
SBS	Chr5	21013413	T-C	Homo
SBS	Chr5	8020633	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g14280
SBS	Chr5	8921993	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g15810
SBS	Chr6	2485908	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g05500
SBS	Chr6	7253638	T-G	Homo
SBS	Chr7	16976355	C-T	Homo
SBS	Chr8	8993567	C-T	HET
SBS	Chr9	13779584	G-A	Homo
SBS	Chr9	16696732	T-A	Homo

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	766001	1006000	239999	44
Deletion	Chr7	2757828	2757829	1
Deletion	Chr11	3979219	3979221	2
Deletion	Chr5	5585751	5585760	9
Deletion	Chr1	6155896	6155906	10
Deletion	Chr8	7148501	7148502	1	LOC_Os08g12130
Deletion	Chr6	9896637	9896638	1
Deletion	Chr5	20239884	20239892	8
Deletion	Chr11	24878001	25051000	172999	23
Deletion	Chr11	25075001	25112000	36999	3
Deletion	Chr8	25343824	25343830	6
Deletion	Chr4	25785921	25785927	6
Deletion	Chr2	28848001	28894000	45999	5
Deletion	Chr3	30091816	30091821	5
Deletion	Chr4	33144976	33144988	12
Deletion	Chr4	33511398	33511406	8
Deletion	Chr1	37402365	37402386	21

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	21904398	21904399	2
Insertion	Chr10	8904997	8904997	1
Insertion	Chr11	16671151	16671151	1
Insertion	Chr11	7848889	7848889	1
Insertion	Chr2	3071335	3071335	1
Insertion	Chr4	10575288	10575289	2
Insertion	Chr8	20399713	20399714	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	25677654	25685616
Inversion	Chr4	28549931	28666595
Inversion	Chr4	28647657	28666492	LOC_Os04g48140

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr4	3642510	Chr2	32366191
Translocation	Chr11	19390379	Chr4	3614421
Translocation	Chr4	28545515	Chr2	34844326
Translocation	Chr4	28549925	Chr2	34844335

Main menu