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| Mutant Information |
|---|
| Mutant Name | FN3697-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3697-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21079068 | C-A | Homo | ||
| SBS | Chr1 | 28520114 | G-C | HET | ||
| SBS | Chr1 | 32233218 | T-C | HET | ||
| SBS | Chr10 | 245572 | C-G | HET | ||
| SBS | Chr10 | 6969760 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g12530 |
| SBS | Chr11 | 11034489 | G-C | Homo | ||
| SBS | Chr11 | 23302548 | T-C | HET | ||
| SBS | Chr11 | 881035 | G-A | HET | ||
| SBS | Chr12 | 19759058 | C-T | HET | ||
| SBS | Chr12 | 26448206 | T-C | HET | ||
| SBS | Chr12 | 4562150 | A-G | HET | ||
| SBS | Chr12 | 7324793 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g13150 |
| SBS | Chr3 | 17542637 | C-T | Homo | ||
| SBS | Chr3 | 18994346 | G-A | HET | ||
| SBS | Chr3 | 35488300 | C-T | HET | ||
| SBS | Chr4 | 25796890 | A-G | HET | ||
| SBS | Chr4 | 26826213 | A-G | HET | ||
| SBS | Chr4 | 31363936 | G-T | HET | ||
| SBS | Chr5 | 18823270 | G-A | HET | ||
| SBS | Chr6 | 15597136 | C-A | HET | ||
| SBS | Chr6 | 19814192 | T-A | HET | ||
| SBS | Chr6 | 20831323 | C-T | HET | ||
| SBS | Chr6 | 6935866 | T-G | Homo | ||
| SBS | Chr7 | 10608673 | C-T | HET | ||
| SBS | Chr7 | 11162149 | A-T | HET | ||
| SBS | Chr7 | 14207923 | T-C | HET | ||
| SBS | Chr7 | 19399080 | T-A | HET | ||
| SBS | Chr7 | 29257915 | T-A | Homo | ||
| SBS | Chr8 | 10157405 | C-T | HET | ||
| SBS | Chr8 | 15544479 | G-A | HET | ||
| SBS | Chr8 | 17543486 | G-A | HET | ||
| SBS | Chr8 | 7819873 | A-T | HET | ||
| SBS | Chr9 | 1859835 | A-G | Homo | ||
| SBS | Chr9 | 8388726 | C-G | HET |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 1294936 | 1294943 | 7 | |
| Deletion | Chr10 | 2579147 | 2579149 | 2 | |
| Deletion | Chr9 | 4904867 | 4904868 | 1 | |
| Deletion | Chr8 | 6201413 | 6201421 | 8 | |
| Deletion | Chr2 | 6492811 | 6492822 | 11 | LOC_Os02g12450 |
| Deletion | Chr1 | 8803186 | 8803187 | 1 | |
| Deletion | Chr11 | 16609194 | 16609195 | 1 | |
| Deletion | Chr1 | 35974932 | 35974935 | 3 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 22956728 | 22956728 | 1 | |
| Insertion | Chr12 | 8264472 | 8264474 | 3 |
Inversions: 9
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 955235 | 1125543 | |
| Inversion | Chr11 | 955257 | 1125552 | |
| Inversion | Chr9 | 1893732 | 1893853 | LOC_Os09g03750 |
| Inversion | Chr3 | 6963723 | 6963988 | |
| Inversion | Chr10 | 17933581 | 17933980 | |
| Inversion | Chr10 | 20538269 | 20538480 | LOC_Os10g38450 |
| Inversion | Chr5 | 22839379 | 22839480 | LOC_Os05g38950 |
| Inversion | Chr1 | 32268750 | 32269091 | LOC_Os01g56040 |
| Inversion | Chr1 | 42072708 | 42073045 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr3 | 18216525 | Chr1 | 25578272 | LOC_Os03g31839 |
| Translocation | Chr8 | 27804406 | Chr2 | 15723699 | 2 |
| Translocation | Chr2 | 27928734 | Chr1 | 8937076 |