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| Mutant Information |
|---|
| Mutant Name | FN3699-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3699-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) |
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11820275 | G-A | Homo | ||
| SBS | Chr1 | 12513187 | G-A | Homo | ||
| SBS | Chr1 | 18591704 | T-C | Homo | ||
| SBS | Chr1 | 21428496 | C-G | Homo | ||
| SBS | Chr10 | 13667080 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g26360 |
| SBS | Chr10 | 8838908 | G-A | HET | ||
| SBS | Chr11 | 19430255 | A-G | HET | ||
| SBS | Chr11 | 9423147 | A-G | HET | ||
| SBS | Chr12 | 12112229 | A-T | Homo | ||
| SBS | Chr12 | 5013298 | A-G | Homo | ||
| SBS | Chr12 | 6773703 | A-G | Homo | ||
| SBS | Chr12 | 6773712 | C-T | Homo | ||
| SBS | Chr2 | 13562497 | A-C | Homo | ||
| SBS | Chr2 | 16147394 | G-C | HET | ||
| SBS | Chr2 | 17751720 | C-T | HET | ||
| SBS | Chr2 | 30776353 | T-C | HET | ||
| SBS | Chr2 | 33782973 | A-T | HET | ||
| SBS | Chr3 | 1708484 | G-T | Homo | ||
| SBS | Chr3 | 22596568 | T-A | HET | ||
| SBS | Chr3 | 22596569 | G-A | HET | ||
| SBS | Chr3 | 27828498 | C-T | HET | ||
| SBS | Chr3 | 8848614 | G-A | HET | ||
| SBS | Chr4 | 13225721 | G-A | HET | ||
| SBS | Chr4 | 13225722 | G-A | HET | ||
| SBS | Chr4 | 19166873 | A-G | HET | ||
| SBS | Chr4 | 4576354 | G-T | HET | ||
| SBS | Chr4 | 7025649 | A-C | HET | ||
| SBS | Chr4 | 7033537 | T-A | HET | ||
| SBS | Chr4 | 7904018 | T-G | HET | ||
| SBS | Chr7 | 10713917 | G-C | Homo | ||
| SBS | Chr7 | 12402955 | G-A | HET | ||
| SBS | Chr7 | 23885773 | G-A | HET | ||
| SBS | Chr8 | 107375 | T-G | Homo | ||
| SBS | Chr8 | 3467151 | C-T | Homo | ||
| SBS | Chr9 | 5627407 | C-A | HET |
Deletions: 22
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 26753726 | 26753915 | 190 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 10408965 | 10409104 | |
| Inversion | Chr1 | 32546628 | 32546939 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 3886006 | Chr9 | 12616605 | 2 |
| Translocation | Chr12 | 6776006 | Chr7 | 10124705 | |
| Translocation | Chr12 | 6776010 | Chr3 | 21811758 | |
| Translocation | Chr11 | 9435838 | Chr4 | 29789906 |