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Mutant Information

Mutant NameFN3699-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3699-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 35
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr111820275G-AHomo
SBSChr112513187G-AHomo
SBSChr118591704T-CHomo
SBSChr121428496C-GHomo
SBSChr1013667080C-AHomoNON_SYNONYMOUS_CODINGLOC_Os10g26360
SBSChr108838908G-AHET
SBSChr1119430255A-GHET
SBSChr119423147A-GHET
SBSChr1212112229A-THomo
SBSChr125013298A-GHomo
SBSChr126773703A-GHomo
SBSChr126773712C-THomo
SBSChr213562497A-CHomo
SBSChr216147394G-CHET
SBSChr217751720C-THET
SBSChr230776353T-CHET
SBSChr233782973A-THET
SBSChr31708484G-THomo
SBSChr322596568T-AHET
SBSChr322596569G-AHET
SBSChr327828498C-THET
SBSChr38848614G-AHET
SBSChr413225721G-AHET
SBSChr413225722G-AHET
SBSChr419166873A-GHET
SBSChr44576354G-THET
SBSChr47025649A-CHET
SBSChr47033537T-AHET
SBSChr47904018T-GHET
SBSChr710713917G-CHomo
SBSChr712402955G-AHET
SBSChr723885773G-AHET
SBSChr8107375T-GHomo
SBSChr83467151C-THomo
SBSChr95627407C-AHET

Deletions: 22
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr34757034757063
DeletionChr69570519570532
DeletionChr101985112198513422
DeletionChr3766973576697427
DeletionChr310507731105077332
DeletionChr411501435115014383
DeletionChr211610910116109111
DeletionChr1011647309116473101
DeletionChr812345138123451479
DeletionChr10186311811863121332
DeletionChr1018903735189037372
DeletionChr41920200119268000659996
DeletionChr819818365198183661
DeletionChr1219821001198980007699913
DeletionChr620449976204499771
DeletionChr1218293432182935512
DeletionChr125476099254761067
DeletionChr827899490278994911
DeletionChr429513276295132782
DeletionChr630175540301755477
DeletionChr333655147336551481
DeletionChr137071367370713681

Insertions: 1
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr122675372626753915190

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr101040896510409104
InversionChr13254662832546939

Translocations: 4
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr123886006Chr9126166052
TranslocationChr126776006Chr710124705
TranslocationChr126776010Chr321811758
TranslocationChr119435838Chr429789906