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| Mutant Information |
|---|
| Mutant Name | FN3700-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3700-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12272391 | C-T | HET | ||
| SBS | Chr1 | 18604157 | A-G | HET | ||
| SBS | Chr1 | 20585936 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g36930 |
| SBS | Chr1 | 20585937 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g36930 |
| SBS | Chr1 | 33398332 | C-T | HET | ||
| SBS | Chr10 | 15917931 | C-T | HET | ||
| SBS | Chr10 | 18770812 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g35160 |
| SBS | Chr10 | 20823083 | A-T | HET | ||
| SBS | Chr10 | 7833034 | C-T | HET | ||
| SBS | Chr11 | 17279531 | T-C | Homo | ||
| SBS | Chr12 | 10858954 | A-T | HET | ||
| SBS | Chr12 | 16559104 | A-G | HET | ||
| SBS | Chr2 | 12219491 | G-A | HET | ||
| SBS | Chr2 | 15090220 | A-G | HET | ||
| SBS | Chr2 | 15643256 | T-C | HET | ||
| SBS | Chr2 | 15748543 | T-C | HET | ||
| SBS | Chr3 | 15747432 | C-T | HET | ||
| SBS | Chr3 | 17831591 | A-T | HET | ||
| SBS | Chr3 | 25650034 | G-A | HET | ||
| SBS | Chr3 | 7836471 | C-A | HET | ||
| SBS | Chr4 | 33351644 | C-A | HET | ||
| SBS | Chr4 | 33351645 | T-A | HET | ||
| SBS | Chr5 | 26312983 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g45350 |
| SBS | Chr5 | 7314245 | G-T | HET | ||
| SBS | Chr6 | 226540 | T-C | HET | ||
| SBS | Chr6 | 25006768 | G-A | HET | ||
| SBS | Chr8 | 26474506 | G-A | HET | ||
| SBS | Chr9 | 1213385 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g02700 |
| SBS | Chr9 | 21674326 | C-T | Homo |
Deletions: 29
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 293270 | 293277 | 7 | LOC_Os01g01580 |
| Deletion | Chr9 | 2119056 | 2119066 | 10 | |
| Deletion | Chr9 | 2320304 | 2320308 | 4 | |
| Deletion | Chr12 | 3175221 | 3175223 | 2 | LOC_Os12g06550 |
| Deletion | Chr11 | 5850001 | 5873000 | 22999 | LOC_Os11g10670 |
| Deletion | Chr6 | 6657854 | 6657858 | 4 | |
| Deletion | Chr12 | 7681984 | 7682001 | 17 | |
| Deletion | Chr6 | 9294767 | 9294768 | 1 | LOC_Os06g16310 |
| Deletion | Chr2 | 11540298 | 11540299 | 1 | LOC_Os02g19720 |
| Deletion | Chr3 | 11559131 | 11559177 | 46 | |
| Deletion | Chr11 | 13294034 | 13294039 | 5 | LOC_Os11g23100 |
| Deletion | Chr5 | 13998277 | 13998278 | 1 | |
| Deletion | Chr11 | 14604795 | 14604799 | 4 | |
| Deletion | Chr6 | 16678514 | 16678515 | 1 | |
| Deletion | Chr8 | 16891219 | 16891220 | 1 | |
| Deletion | Chr2 | 17108242 | 17108243 | 1 | |
| Deletion | Chr9 | 18340164 | 18340169 | 5 | |
| Deletion | Chr9 | 18800985 | 18800986 | 1 | |
| Deletion | Chr3 | 19337095 | 19337102 | 7 | |
| Deletion | Chr1 | 20702704 | 20702706 | 2 | |
| Deletion | Chr9 | 21185834 | 21185836 | 2 | |
| Deletion | Chr9 | 21841495 | 21841501 | 6 | LOC_Os09g37880 |
| Deletion | Chr12 | 22667857 | 22667859 | 2 | LOC_Os12g36970 |
| Deletion | Chr4 | 29019807 | 29019808 | 1 | |
| Deletion | Chr6 | 29853916 | 29853929 | 13 | |
| Deletion | Chr3 | 31480012 | 31480024 | 12 | LOC_Os03g55330 |
| Deletion | Chr1 | 32278972 | 32278985 | 13 | |
| Deletion | Chr3 | 32420766 | 32420771 | 5 | |
| Deletion | Chr1 | 33168415 | 33168417 | 2 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 9006796 | 9006796 | 1 | |
| Insertion | Chr3 | 5549802 | 5549808 | 7 | |
| Insertion | Chr4 | 4462093 | 4462093 | 1 | |
| Insertion | Chr8 | 17919925 | 17919925 | 1 |
No Inversion
No Translocation