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| Mutant Information |
|---|
| Mutant Name | FN3705-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3705-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15557153 | G-A | Homo | ||
| SBS | Chr1 | 24292437 | C-T | Homo | ||
| SBS | Chr1 | 27206905 | T-A | Homo | ||
| SBS | Chr1 | 37591731 | A-T | Homo | ||
| SBS | Chr1 | 5077408 | A-T | HET | ||
| SBS | Chr1 | 6622670 | G-A | HET | ||
| SBS | Chr11 | 9324497 | C-A | HET | ||
| SBS | Chr12 | 1449013 | C-T | HET | ||
| SBS | Chr12 | 1449014 | C-T | HET | ||
| SBS | Chr2 | 2180180 | C-A | HET | ||
| SBS | Chr2 | 4278998 | G-T | Homo | ||
| SBS | Chr3 | 25016828 | C-T | HET | ||
| SBS | Chr3 | 30157618 | C-T | Homo | ||
| SBS | Chr3 | 7129959 | C-T | Homo | ||
| SBS | Chr4 | 2210610 | C-A | HET | ||
| SBS | Chr4 | 24441769 | T-A | HET | ||
| SBS | Chr4 | 28920783 | C-T | HET | ||
| SBS | Chr4 | 8911474 | G-A | HET | ||
| SBS | Chr4 | 8969684 | G-A | Homo | ||
| SBS | Chr5 | 12804950 | G-A | Homo | ||
| SBS | Chr5 | 1965199 | A-G | Homo | ||
| SBS | Chr7 | 22686846 | A-G | HET | ||
| SBS | Chr7 | 22944756 | G-A | HET | ||
| SBS | Chr7 | 8563563 | A-G | Homo | ||
| SBS | Chr7 | 9501420 | G-A | Homo | ||
| SBS | Chr8 | 18826253 | C-T | Homo | ||
| SBS | Chr8 | 18826254 | G-T | Homo | ||
| SBS | Chr8 | 2272845 | A-G | HET | ||
| SBS | Chr8 | 24826593 | A-T | Homo | ||
| SBS | Chr9 | 3997712 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g07860 |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 9025758 | 9025760 | 2 | |
| Deletion | Chr12 | 12557150 | 12557151 | 1 | |
| Deletion | Chr6 | 12839001 | 12898000 | 58999 | 12 |
| Deletion | Chr11 | 14100631 | 14100633 | 2 | |
| Deletion | Chr12 | 14511722 | 14511723 | 1 | |
| Deletion | Chr11 | 14671279 | 14671280 | 1 | |
| Deletion | Chr7 | 14804296 | 14804300 | 4 | LOC_Os07g25760 |
| Deletion | Chr8 | 19393151 | 19393152 | 1 | |
| Deletion | Chr1 | 22711404 | 22711405 | 1 | |
| Deletion | Chr8 | 26913648 | 26913649 | 1 | |
| Deletion | Chr1 | 36197001 | 36316000 | 118999 | 20 |
| Deletion | Chr1 | 37459021 | 37459032 | 11 | LOC_Os01g64560 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 5628938 | 5628940 | 3 | |
| Insertion | Chr2 | 10627343 | 10627347 | 5 | |
| Insertion | Chr4 | 13544345 | 13544345 | 1 | |
| Insertion | Chr4 | 29016773 | 29016773 | 1 | |
| Insertion | Chr8 | 11160608 | 11160608 | 1 | LOC_Os08g18210 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 579178 | 652296 | |
| Inversion | Chr8 | 579182 | 652297 | |
| Inversion | Chr3 | 13750903 | 14230261 | |
| Inversion | Chr3 | 21195955 | 21196136 | LOC_Os03g38170 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 3844939 | Chr3 | 13382505 | |
| Translocation | Chr6 | 11524099 | Chr1 | 2414492 | 2 |
| Translocation | Chr6 | 11525776 | Chr1 | 2414490 | 2 |
| Translocation | Chr6 | 11525777 | Chr1 | 26805706 | LOC_Os06g20090 |
| Translocation | Chr3 | 16447002 | Chr2 | 25541458 | |
| Translocation | Chr10 | 18597694 | Chr3 | 6443121 | |
| Translocation | Chr5 | 26396473 | Chr1 | 15785402 |