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Mutant Information

Mutant NameFN3707-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3707-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 47
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr115536148A-THomo
SBSChr121307269G-AHomo
SBSChr13834468G-THET
SBSChr14398195C-AHET
SBSChr1013365907G-AHET
SBSChr1120289001G-CHET
SBSChr1121111007T-AHETNON_SYNONYMOUS_CODINGLOC_Os11g35940
SBSChr1123485875G-AHET
SBSChr112899426C-THomoNON_SYNONYMOUS_CODINGLOC_Os11g06080
SBSChr114991480G-AHETNON_SYNONYMOUS_CODINGLOC_Os11g09310
SBSChr1211725372C-THET
SBSChr1212610525G-THET
SBSChr1224098852T-AHomo
SBSChr1226290241C-AHET
SBSChr212708665A-THETSTOP_GAINEDLOC_Os02g21400
SBSChr217838502C-THET
SBSChr218744742C-THET
SBSChr231886673C-GHETNON_SYNONYMOUS_CODINGLOC_Os02g52100
SBSChr25682739A-GHET
SBSChr315370743C-THET
SBSChr329412241G-AHET
SBSChr435198687C-AHET
SBSChr43529705G-THET
SBSChr4713541G-AHET
SBSChr49317432C-GHET
SBSChr51695453T-CHETNON_SYNONYMOUS_CODINGLOC_Os05g03810
SBSChr518823852C-THET
SBSChr522907727A-GHET
SBSChr522952420T-CHET
SBSChr527511544C-AHETNON_SYNONYMOUS_CODINGLOC_Os05g47980
SBSChr528865055T-CHET
SBSChr529266280T-CHET
SBSChr617215702G-AHET
SBSChr620454048G-AHET
SBSChr629123428G-AHET
SBSChr63374463C-AHET
SBSChr63636420A-GHET
SBSChr64730612A-THET
SBSChr67818219T-AHET
SBSChr68332457A-GHET
SBSChr715412757G-AHET
SBSChr719428914C-THETNON_SYNONYMOUS_CODINGLOC_Os07g32590
SBSChr720253610G-AHET
SBSChr729261699G-THET
SBSChr89985678A-GHET
SBSChr919060627G-AHET
SBSChr95529322T-AHETNON_SYNONYMOUS_CODINGLOC_Os09g10170

Deletions: 9
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr1667248266724886
DeletionChr4126158131261582916
DeletionChr1141905131419052613
DeletionChr11694546416946113649
DeletionChr217572601175726032
DeletionChr821886442218864431
DeletionChr124482663244826652
DeletionChr226314882263148831
DeletionChr139107827391078358

No Insertion

Inversions: 4
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr137821204105207
InversionChr878063568383227LOC_Os08g13970
InversionChr21204158412469531LOC_Os02g20420
InversionChr21246953513309326

Translocations: 6
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr813640584Chr7135736772
TranslocationChr1222471004Chr334363467
TranslocationChr1222475003Chr334368499
TranslocationChr623465790Chr420897001
TranslocationChr726051578Chr334363471
TranslocationChr726052467Chr137817052