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Mutant Information |
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Mutant Name | FN3707-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3707-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 47
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 15536148 | A-T | Homo | ||
SBS | Chr1 | 21307269 | G-A | Homo | ||
SBS | Chr1 | 3834468 | G-T | HET | ||
SBS | Chr1 | 4398195 | C-A | HET | ||
SBS | Chr10 | 13365907 | G-A | HET | ||
SBS | Chr11 | 20289001 | G-C | HET | ||
SBS | Chr11 | 21111007 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g35940 |
SBS | Chr11 | 23485875 | G-A | HET | ||
SBS | Chr11 | 2899426 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g06080 |
SBS | Chr11 | 4991480 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g09310 |
SBS | Chr12 | 11725372 | C-T | HET | ||
SBS | Chr12 | 12610525 | G-T | HET | ||
SBS | Chr12 | 24098852 | T-A | Homo | ||
SBS | Chr12 | 26290241 | C-A | HET | ||
SBS | Chr2 | 12708665 | A-T | HET | STOP_GAINED | LOC_Os02g21400 |
SBS | Chr2 | 17838502 | C-T | HET | ||
SBS | Chr2 | 18744742 | C-T | HET | ||
SBS | Chr2 | 31886673 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g52100 |
SBS | Chr2 | 5682739 | A-G | HET | ||
SBS | Chr3 | 15370743 | C-T | HET | ||
SBS | Chr3 | 29412241 | G-A | HET | ||
SBS | Chr4 | 35198687 | C-A | HET | ||
SBS | Chr4 | 3529705 | G-T | HET | ||
SBS | Chr4 | 713541 | G-A | HET | ||
SBS | Chr4 | 9317432 | C-G | HET | ||
SBS | Chr5 | 1695453 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g03810 |
SBS | Chr5 | 18823852 | C-T | HET | ||
SBS | Chr5 | 22907727 | A-G | HET | ||
SBS | Chr5 | 22952420 | T-C | HET | ||
SBS | Chr5 | 27511544 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g47980 |
SBS | Chr5 | 28865055 | T-C | HET | ||
SBS | Chr5 | 29266280 | T-C | HET | ||
SBS | Chr6 | 17215702 | G-A | HET | ||
SBS | Chr6 | 20454048 | G-A | HET | ||
SBS | Chr6 | 29123428 | G-A | HET | ||
SBS | Chr6 | 3374463 | C-A | HET | ||
SBS | Chr6 | 3636420 | A-G | HET | ||
SBS | Chr6 | 4730612 | A-T | HET | ||
SBS | Chr6 | 7818219 | T-A | HET | ||
SBS | Chr6 | 8332457 | A-G | HET | ||
SBS | Chr7 | 15412757 | G-A | HET | ||
SBS | Chr7 | 19428914 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g32590 |
SBS | Chr7 | 20253610 | G-A | HET | ||
SBS | Chr7 | 29261699 | G-T | HET | ||
SBS | Chr8 | 9985678 | A-G | HET | ||
SBS | Chr9 | 19060627 | G-A | HET | ||
SBS | Chr9 | 5529322 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g10170 |
Deletions: 9
No Insertion
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr1 | 3782120 | 4105207 | |
Inversion | Chr8 | 7806356 | 8383227 | LOC_Os08g13970 |
Inversion | Chr2 | 12041584 | 12469531 | LOC_Os02g20420 |
Inversion | Chr2 | 12469535 | 13309326 |
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 13640584 | Chr7 | 13573677 | 2 |
Translocation | Chr12 | 22471004 | Chr3 | 34363467 | |
Translocation | Chr12 | 22475003 | Chr3 | 34368499 | |
Translocation | Chr6 | 23465790 | Chr4 | 20897001 | |
Translocation | Chr7 | 26051578 | Chr3 | 34363471 | |
Translocation | Chr7 | 26052467 | Chr1 | 3781705 | 2 |