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Mutant Information |
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Mutant Name | FN3708-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3708-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 20
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 1135083 | C-T | HET | ||
SBS | Chr1 | 14686193 | A-C | HET | ||
SBS | Chr10 | 10551275 | T-A | HET | ||
SBS | Chr10 | 21076209 | A-T | HET | ||
SBS | Chr11 | 12839507 | G-A | Homo | ||
SBS | Chr11 | 13398814 | C-A | HET | STOP_GAINED | LOC_Os11g23236 |
SBS | Chr12 | 22795085 | C-A | Homo | ||
SBS | Chr2 | 15920634 | G-A | HET | SPLICE_SITE_ACCEPTOR | LOC_Os02g27080 |
SBS | Chr2 | 17652299 | T-C | HET | ||
SBS | Chr2 | 26304188 | T-G | Homo | ||
SBS | Chr3 | 30235723 | G-T | Homo | ||
SBS | Chr4 | 11642938 | C-T | HET | ||
SBS | Chr4 | 15426117 | G-A | HET | ||
SBS | Chr4 | 31680084 | A-T | HET | ||
SBS | Chr5 | 9587482 | A-T | Homo | ||
SBS | Chr6 | 14191274 | T-C | HET | ||
SBS | Chr6 | 24791993 | G-A | Homo | ||
SBS | Chr8 | 24803467 | T-A | Homo | ||
SBS | Chr8 | 24954969 | G-A | Homo | ||
SBS | Chr9 | 7175882 | G-T | HET |
Deletions: 10
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 174468 | 174477 | 9 | |
Deletion | Chr1 | 10058841 | 10058846 | 5 | LOC_Os01g17980 |
Deletion | Chr11 | 22377158 | 22377172 | 14 | |
Deletion | Chr3 | 22859827 | 22859829 | 2 | |
Deletion | Chr12 | 24459571 | 24459583 | 12 | LOC_Os12g39630 |
Deletion | Chr6 | 24887298 | 24887332 | 34 | |
Deletion | Chr8 | 26480944 | 26480960 | 16 | |
Deletion | Chr1 | 29047571 | 29047573 | 2 | |
Deletion | Chr3 | 34920213 | 34920220 | 7 | LOC_Os03g61580 |
Deletion | Chr1 | 41677799 | 41677802 | 3 |
Insertions: 6
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 41674776 | 41674777 | 2 | |
Insertion | Chr12 | 11626172 | 11626223 | 52 | |
Insertion | Chr4 | 3853765 | 3853767 | 3 | LOC_Os04g07260![]() |
Insertion | Chr4 | 4697248 | 4697311 | 64 | |
Insertion | Chr4 | 8996999 | 8996999 | 1 | |
Insertion | Chr5 | 14584883 | 14584892 | 10 |
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr10 | 14880890 | 15326872 | LOC_Os10g29495 |
Inversion | Chr10 | 14880901 | 15326891 | LOC_Os10g29495 |
Inversion | Chr2 | 30165060 | 30451530 | LOC_Os02g49370 |
Inversion | Chr2 | 30165068 | 30509181 | LOC_Os02g49370 |
Translocations: 1
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 3399134 | Chr4 | 14875918 |