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Mutant Information

Mutant NameFN3708-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3708-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 20
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr11135083C-THET
SBSChr114686193A-CHET
SBSChr1010551275T-AHET
SBSChr1021076209A-THET
SBSChr1112839507G-AHomo
SBSChr1113398814C-AHETSTOP_GAINEDLOC_Os11g23236
SBSChr1222795085C-AHomo
SBSChr215920634G-AHETSPLICE_SITE_ACCEPTORLOC_Os02g27080
SBSChr217652299T-CHET
SBSChr226304188T-GHomo
SBSChr330235723G-THomo
SBSChr411642938C-THET
SBSChr415426117G-AHET
SBSChr431680084A-THET
SBSChr59587482A-THomo
SBSChr614191274T-CHET
SBSChr624791993G-AHomo
SBSChr824803467T-AHomo
SBSChr824954969G-AHomo
SBSChr97175882G-THET

Deletions: 10
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr41744681744779
DeletionChr110058841100588465LOC_Os01g17980
DeletionChr11223771582237717214
DeletionChr322859827228598292
DeletionChr12244595712445958312LOC_Os12g39630
DeletionChr6248872982488733234
DeletionChr8264809442648096016
DeletionChr129047571290475732
DeletionChr334920213349202207LOC_Os03g61580
DeletionChr141677799416778023

Insertions: 6
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr141674776416747772
InsertionChr12116261721162622352
InsertionChr4385376538537673LOC_Os04g07260image
InsertionChr44697248469731164
InsertionChr4899699989969991
InsertionChr5145848831458489210

Inversions: 4
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr101488089015326872LOC_Os10g29495
InversionChr101488090115326891LOC_Os10g29495
InversionChr23016506030451530LOC_Os02g49370
InversionChr23016506830509181LOC_Os02g49370

Translocations: 1
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr113399134Chr414875918