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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1523291	A-T	HET
SBS	Chr1	1523292	C-T	HET
SBS	Chr1	10080424	T-C	HET
SBS	Chr1	10080425	G-T	HET
SBS	Chr1	13193879	C-T	HET
SBS	Chr2	10601239	G-A	HET
SBS	Chr2	33028343	G-A	Homo
SBS	Chr3	18753937	G-A	HET
SBS	Chr3	26008623	A-T	HET
SBS	Chr3	30782526	G-A	Homo
SBS	Chr4	5216224	G-A	Homo
SBS	Chr4	6716227	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g12190
SBS	Chr4	9274794	T-G	HET
SBS	Chr4	19334063	G-T	HET
SBS	Chr4	29940741	G-A	HET
SBS	Chr4	30454288	T-A	HET
SBS	Chr4	32485105	G-A	HET
SBS	Chr4	32485106	G-A	HET
SBS	Chr5	5971257	G-A	HET
SBS	Chr5	14276692	A-T	HET
SBS	Chr5	15767181	C-T	HET
SBS	Chr6	21320050	C-G	Homo
SBS	Chr7	566388	G-A	HET
SBS	Chr8	9186680	C-T	HET
SBS	Chr8	17534357	T-G	HET
SBS	Chr8	18075049	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g29490
SBS	Chr9	2992485	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g06360
SBS	Chr9	4926903	G-A	HET
SBS	Chr9	8949634	T-A	HET
SBS	Chr10	3302665	C-T	Homo
SBS	Chr10	17440549	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g33240
SBS	Chr11	1323170	G-C	Homo
SBS	Chr11	16579358	C-G	HET
SBS	Chr12	10691036	A-T	Homo
SBS	Chr12	10691037	T-A	Homo
SBS	Chr12	13633439	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g23990
SBS	Chr12	14214821	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g24780

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3927141	3927147	6	LOC_Os02g07575
Deletion	Chr6	6376665	6376667	2
Deletion	Chr4	6645818	6645824	6
Deletion	Chr8	7643486	7643490	4
Deletion	Chr4	8106154	8106177	23
Deletion	Chr5	8548001	8649000	100999	19
Deletion	Chr5	8653001	8741000	87999	21
Deletion	Chr5	8747001	8891000	143999	27
Deletion	Chr5	8895001	8939000	43999	7
Deletion	Chr12	9557001	9594000	36999	6
Deletion	Chr4	14559773	14559777	4
Deletion	Chr4	16249027	16249032	5	LOC_Os04g27490
Deletion	Chr3	22797797	22797798	1	LOC_Os03g41010
Deletion	Chr2	23462995	23462996	1
Deletion	Chr7	23881189	23881198	9
Deletion	Chr3	27245653	27245690	37
Deletion	Chr3	33972688	33972697	9

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	31657230	31657231	2
Insertion	Chr3	35519478	35519480	3	LOC_Os03g62770
Insertion	Chr1	5763183	5763188	6
Insertion	Chr3	8825394	8825394	1
Insertion	Chr4	2928325	2928370	46
Insertion	Chr5	6125832	6125832	1
Insertion	Chr7	12154985	12154987	3
Insertion	Chr8	10714504	10714509	6
Insertion	Chr10	5985524	5985524	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	4441568	5046132	LOC_Os04g08310
Inversion	Chr12	9557237	9809778	2
Inversion	Chr12	9595017	9610455	LOC_Os12g16760
Inversion	Chr12	9809799	10134267	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	11410420	Chr4	4973307	LOC_Os04g09350
Translocation	Chr11	20126119	Chr3	8260645	2
Translocation	Chr6	21754283	Chr3	7842544	LOC_Os03g14420
Translocation	Chr6	21754284	Chr3	1347193	LOC_Os03g03180
Translocation	Chr9	21805690	Chr5	6399762	LOC_Os09g37840
Translocation	Chr5	28569800	Chr3	1347422	LOC_Os03g03180
Translocation	Chr5	28570395	Chr3	1338468

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