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| Mutant Information |
|---|
| Mutant Name | FN3711-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3711-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15043653 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g27000 |
| SBS | Chr1 | 18920376 | C-T | Homo | ||
| SBS | Chr1 | 20025344 | G-C | HET | ||
| SBS | Chr1 | 37598378 | C-T | HET | ||
| SBS | Chr1 | 6561569 | C-A | HET | ||
| SBS | Chr1 | 8391799 | A-G | Homo | ||
| SBS | Chr10 | 17537714 | G-A | HET | ||
| SBS | Chr10 | 18363447 | T-C | HET | ||
| SBS | Chr10 | 21600961 | C-T | HET | ||
| SBS | Chr10 | 9624195 | C-T | HET | ||
| SBS | Chr11 | 10451871 | A-G | Homo | ||
| SBS | Chr12 | 20939291 | T-A | HET | ||
| SBS | Chr2 | 25253919 | C-T | Homo | ||
| SBS | Chr2 | 28034651 | G-A | Homo | ||
| SBS | Chr2 | 5532949 | T-C | Homo | ||
| SBS | Chr3 | 19288637 | T-C | HET | ||
| SBS | Chr3 | 32256112 | A-T | HET | ||
| SBS | Chr3 | 34832596 | A-T | HET | ||
| SBS | Chr3 | 754254 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g02240 |
| SBS | Chr4 | 12683143 | A-T | HET | ||
| SBS | Chr4 | 18488780 | C-A | HET | ||
| SBS | Chr4 | 26778476 | A-T | Homo | ||
| SBS | Chr4 | 27691914 | A-G | HET | ||
| SBS | Chr4 | 2928839 | C-T | HET | ||
| SBS | Chr5 | 16180427 | C-A | HET | ||
| SBS | Chr5 | 4364453 | C-T | HET | ||
| SBS | Chr6 | 10024428 | G-T | HET | ||
| SBS | Chr6 | 27356120 | G-T | HET | ||
| SBS | Chr6 | 9502797 | C-T | Homo | ||
| SBS | Chr7 | 6719239 | T-G | HET | ||
| SBS | Chr8 | 13845059 | G-T | HET | ||
| SBS | Chr8 | 21203872 | C-T | HET | ||
| SBS | Chr8 | 24812150 | G-A | HET | ||
| SBS | Chr8 | 25390692 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os08g40110 |
| SBS | Chr9 | 18409690 | T-C | HET | ||
| SBS | Chr9 | 330688 | G-A | HET | ||
| SBS | Chr9 | 4315916 | A-C | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 1201170 | 1201179 | 9 | |
| Deletion | Chr12 | 1466317 | 1466326 | 9 | |
| Deletion | Chr3 | 5526957 | 5526964 | 7 | |
| Deletion | Chr2 | 6601876 | 6601878 | 2 | |
| Deletion | Chr4 | 7294638 | 7294639 | 1 | |
| Deletion | Chr1 | 8391231 | 8391254 | 23 | |
| Deletion | Chr7 | 14268404 | 14268405 | 1 | |
| Deletion | Chr4 | 14579223 | 14579227 | 4 | |
| Deletion | Chr10 | 18690670 | 18690672 | 2 | |
| Deletion | Chr3 | 18798676 | 18798677 | 1 | |
| Deletion | Chr6 | 19601482 | 19601503 | 21 | |
| Deletion | Chr9 | 21052782 | 21052785 | 3 | |
| Deletion | Chr1 | 28353008 | 28353009 | 1 | |
| Deletion | Chr1 | 34956700 | 34956711 | 11 | LOC_Os01g60440 |
| Deletion | Chr2 | 35061622 | 35061629 | 7 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 26131884 | 26131885 | 2 | |
| Insertion | Chr10 | 752229 | 752229 | 1 | LOC_Os10g02190 |
| Insertion | Chr2 | 26693037 | 26693038 | 2 | |
| Insertion | Chr4 | 25598164 | 25598164 | 1 | |
| Insertion | Chr7 | 17560179 | 17560180 | 2 | |
| Insertion | Chr9 | 20278198 | 20278199 | 2 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 749574 | Chr1 | 3761100 | |
| Translocation | Chr8 | 985230 | Chr1 | 25907714 | LOC_Os08g02460 |
| Translocation | Chr12 | 22666404 | Chr2 | 17246351 | LOC_Os02g29130 |
| Translocation | Chr11 | 25739392 | Chr1 | 41115482 |