Search Results
| Mutant Information |
|---|
| Mutant Name | FN3717-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3717-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1209499 | A-T | HET | ||
| SBS | Chr2 | 4386914 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g08260 |
| SBS | Chr2 | 18682108 | G-A | Homo | ||
| SBS | Chr2 | 28831183 | T-A | HET | ||
| SBS | Chr3 | 6802114 | A-C | Homo | ||
| SBS | Chr6 | 24180715 | C-T | Homo | ||
| SBS | Chr7 | 10786955 | G-A | Homo | ||
| SBS | Chr7 | 11690179 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g20280 |
| SBS | Chr7 | 19218137 | G-A | Homo | ||
| SBS | Chr7 | 22710315 | G-A | HET | ||
| SBS | Chr7 | 28169912 | G-A | Homo | ||
| SBS | Chr8 | 6655143 | C-T | HET | ||
| SBS | Chr8 | 26224726 | T-C | HET | ||
| SBS | Chr9 | 22594118 | G-A | Homo | ||
| SBS | Chr10 | 3871281 | G-T | Homo | ||
| SBS | Chr10 | 15017082 | C-T | Homo | ||
| SBS | Chr10 | 17047225 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g32540 |
| SBS | Chr11 | 23892125 | G-A | HET | ||
| SBS | Chr12 | 4282278 | C-T | Homo | ||
| SBS | Chr12 | 27356315 | C-A | HET |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 3821860 | 3821862 | 2 | |
| Deletion | Chr8 | 5910928 | 5910938 | 10 | LOC_Os08g10190 |
| Deletion | Chr5 | 7686440 | 7686442 | 2 | |
| Deletion | Chr2 | 7832011 | 7832129 | 118 | |
| Deletion | Chr10 | 9660742 | 9660746 | 4 | |
| Deletion | Chr3 | 13362876 | 13362877 | 1 | LOC_Os03g23110 |
| Deletion | Chr7 | 26828542 | 26828543 | 1 | |
| Deletion | Chr1 | 27222274 | 27222374 | 100 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 34347296 | 34347296 | 1 | |
| Insertion | Chr2 | 13709743 | 13709746 | 4 | LOC_Os02g23820 |
| Insertion | Chr8 | 6771244 | 6771244 | 1 | |
| Insertion | Chr10 | 15983382 | 15983619 | 238 | |
| Insertion | Chr11 | 11998526 | 11998530 | 5 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 25301588 | 25301931 | |
| Inversion | Chr11 | 27705540 | 27795818 | 2 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr3 | 1053644 | Chr1 | 2701864 | LOC_Os01g05660 |
| Translocation | Chr4 | 6752488 | Chr2 | 4468729 | 2 |
| Translocation | Chr9 | 8086227 | Chr5 | 11371628 | |
| Translocation | Chr9 | 9612361 | Chr1 | 15261532 | |
| Translocation | Chr6 | 9639460 | Chr4 | 12944748 | LOC_Os06g16710 |
| Translocation | Chr7 | 14356577 | Chr6 | 14832862 | 2 |
| Translocation | Chr6 | 18190710 | Chr3 | 8985228 | |
| Translocation | Chr8 | 19395660 | Chr7 | 13123593 | LOC_Os07g23290 |
| Translocation | Chr11 | 24451275 | Chr3 | 12581340 | LOC_Os11g40870 |
| Translocation | Chr11 | 28408563 | Chr9 | 408782 | LOC_Os11g47240 |
| Translocation | Chr11 | 29010103 | Chr3 | 31102232 |