Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3718-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3718-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 17
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19598365 | G-T | Homo | ||
| SBS | Chr1 | 32290610 | C-T | Homo | ||
| SBS | Chr1 | 38442527 | G-T | Homo | ||
| SBS | Chr10 | 20117044 | A-C | Homo | ||
| SBS | Chr11 | 16475224 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g28560 |
| SBS | Chr12 | 1926211 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g04520 |
| SBS | Chr12 | 25950960 | T-C | HET | ||
| SBS | Chr2 | 11328073 | C-T | Homo | ||
| SBS | Chr2 | 30630160 | G-A | Homo | ||
| SBS | Chr3 | 31350882 | T-A | HET | ||
| SBS | Chr3 | 32185938 | G-C | HET | ||
| SBS | Chr6 | 15910909 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g28040 |
| SBS | Chr6 | 25725674 | G-A | Homo | ||
| SBS | Chr8 | 1351271 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g03030 |
| SBS | Chr8 | 15358812 | G-A | HET | ||
| SBS | Chr8 | 25189856 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g39790 |
| SBS | Chr8 | 7587043 | C-A | HET |
Deletions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 5374723 | 5374724 | 1 | LOC_Os09g09880 |
| Deletion | Chr11 | 6187332 | 6187334 | 2 | |
| Deletion | Chr9 | 9932392 | 9932393 | 1 | |
| Deletion | Chr9 | 19408940 | 19408941 | 1 | |
| Deletion | Chr9 | 22473001 | 22531000 | 57999 | 6 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 5369281 | 5369282 | 2 | |
| Insertion | Chr12 | 8943542 | 8943542 | 1 | |
| Insertion | Chr7 | 174804 | 174804 | 1 | |
| Insertion | Chr7 | 2923953 | 2923962 | 10 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 18112643 | 18580713 | |
| Inversion | Chr8 | 18258984 | 18381761 | |
| Inversion | Chr8 | 18258993 | 18381776 |
Translocations: 22
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 2171235 | Chr6 | 5070891 | |
| Translocation | Chr9 | 2681463 | Chr2 | 13953050 | 2 |
| Translocation | Chr7 | 6236935 | Chr3 | 2806725 | |
| Translocation | Chr10 | 6591844 | Chr9 | 8289693 | |
| Translocation | Chr4 | 7871808 | Chr2 | 34492002 | |
| Translocation | Chr10 | 8053077 | Chr7 | 14407267 | 2 |
| Translocation | Chr8 | 9744458 | Chr3 | 16641701 | |
| Translocation | Chr7 | 11200521 | Chr3 | 25420974 | 2 |
| Translocation | Chr11 | 12004243 | Chr10 | 2306383 | |
| Translocation | Chr5 | 13725630 | Chr2 | 3871637 | 2 |
| Translocation | Chr5 | 14988951 | Chr4 | 8427080 | 2 |
| Translocation | Chr10 | 16525717 | Chr4 | 5141265 | LOC_Os04g09580 |
| Translocation | Chr5 | 18580709 | Chr2 | 3872233 | LOC_Os02g07490 |
| Translocation | Chr11 | 18837031 | Chr7 | 25592131 | LOC_Os07g42740 |
| Translocation | Chr11 | 18839432 | Chr7 | 25592128 | LOC_Os07g42740 |
| Translocation | Chr5 | 20725910 | Chr2 | 5558233 | LOC_Os05g34880 |
| Translocation | Chr11 | 21128564 | Chr1 | 19235225 | |
| Translocation | Chr8 | 22103260 | Chr6 | 20863083 | |
| Translocation | Chr11 | 22117747 | Chr8 | 2861108 | 2 |
| Translocation | Chr12 | 26233138 | Chr11 | 8917613 | |
| Translocation | Chr11 | 27573788 | Chr5 | 19106520 | LOC_Os11g45540 |
| Translocation | Chr6 | 30259608 | Chr5 | 13400120 |