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| Mutant Information |
|---|
| Mutant Name | FN3720-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3720-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17327198 | G-A | HET | ||
| SBS | Chr1 | 23400631 | A-C | HET | ||
| SBS | Chr1 | 29467174 | A-T | HET | ||
| SBS | Chr10 | 12486230 | G-A | HET | ||
| SBS | Chr10 | 15353759 | G-A | HET | ||
| SBS | Chr10 | 6468475 | T-C | HET | ||
| SBS | Chr10 | 9415530 | G-A | HET | ||
| SBS | Chr11 | 26903977 | A-C | HET | ||
| SBS | Chr11 | 27099115 | G-A | HET | STOP_GAINED | LOC_Os11g44770 |
| SBS | Chr12 | 25332936 | C-A | Homo | ||
| SBS | Chr2 | 33440902 | C-T | Homo | ||
| SBS | Chr3 | 21695372 | G-T | HET | ||
| SBS | Chr3 | 21695373 | C-T | HET | ||
| SBS | Chr3 | 7297478 | C-T | HET | ||
| SBS | Chr4 | 2004492 | A-G | Homo | ||
| SBS | Chr4 | 23356274 | G-C | HET | ||
| SBS | Chr5 | 4840778 | G-A | HET | ||
| SBS | Chr6 | 28615911 | C-T | Homo | ||
| SBS | Chr6 | 28615912 | A-C | Homo | ||
| SBS | Chr7 | 1115545 | G-A | HET | ||
| SBS | Chr7 | 21606171 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g36160 |
| SBS | Chr7 | 21606172 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g36160 |
| SBS | Chr7 | 29201219 | G-A | HET | ||
| SBS | Chr7 | 3248153 | G-T | HET | ||
| SBS | Chr9 | 13351000 | C-T | Homo | ||
| SBS | Chr9 | 6416435 | G-A | HET |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 4485835 | 4485842 | 7 | |
| Deletion | Chr10 | 4945409 | 4945410 | 1 | |
| Deletion | Chr4 | 7962498 | 7962502 | 4 | |
| Deletion | Chr8 | 8497182 | 8497199 | 17 | |
| Deletion | Chr8 | 13649167 | 13649168 | 1 | LOC_Os08g22690 |
| Deletion | Chr11 | 14732148 | 14732151 | 3 | |
| Deletion | Chr7 | 16418278 | 16418286 | 8 | |
| Deletion | Chr7 | 16714069 | 16714073 | 4 | |
| Deletion | Chr1 | 16907493 | 16907495 | 2 | LOC_Os01g30956 |
| Deletion | Chr2 | 19677214 | 19677221 | 7 | |
| Deletion | Chr3 | 20538913 | 20538914 | 1 | |
| Deletion | Chr1 | 23823419 | 23823420 | 1 | |
| Deletion | Chr12 | 25782121 | 25782122 | 1 | LOC_Os12g41660 |
| Deletion | Chr3 | 26253597 | 26253603 | 6 | |
| Deletion | Chr12 | 27063176 | 27063189 | 13 | |
| Deletion | Chr1 | 36934651 | 36934653 | 2 |
Insertions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 26907191 | 26907192 | 2 | |
| Insertion | Chr1 | 32723184 | 32723184 | 1 | |
| Insertion | Chr4 | 3865689 | 3865694 | 6 | |
| Insertion | Chr5 | 15980109 | 15980109 | 1 | LOC_Os05g27480 |
| Insertion | Chr5 | 23858409 | 23858412 | 4 | |
| Insertion | Chr5 | 27515633 | 27515774 | 142 | |
| Insertion | Chr6 | 12289308 | 12289309 | 2 | |
| Insertion | Chr7 | 10232482 | 10232486 | 5 | LOC_Os07g17330 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 20055085 | 20055384 |
No Translocation